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1<1<1<1<1<1<1<1<1<1<1<1<1<1<1<33333BlastGetReleaseDateBlastGetVersionNumberBlastDeleteUserErrorStringerr_message_mutexBlastSetUserErrorStringTxDfDbInfoNewTxDfDbInfoDestructBlastPrintVersionInfoExBlastPrintVersionInfoPrintTabularOutputHeaderBlastPrintTabularResultsBlastPrintTabulatedResultsExBlastPrintTabulatedResultsPrintKAParametersExtraPrintKAParametersPrintTildeSepLinesBlastPruneSapStructDestructBlastPruneHitsFromSeqAlignAcknowledgeBlastQueryPrintDbReportadd_string_to_bufferExBlastGetPhiReferenceBlastPrintPhiReferenceCAdjustmentGetReferenceCAdjustmentPrintReferenceCBStatisticsGetReferenceCBStatisticsPrintReferenceMegaBlastPrintReferenceBlastGetReferenceBlastPrintReferenceadd_string_to_bufferscan_to_breakBlastPrintFilterWarningblastool_fprintfBlastDeleteHeapBlastGetLetterIndexreverse_seqBlastGetNumIdenticalBlastHSPGetNumIdenticalOOFBlastHSPGetNumIdenticalBLAST_WizardOptionsMaskInitBLASTGetDatabaseTitleFromSeqAnnotBlastFreeHeapBlastMatrixRescaleDestructBlastGiListDestructBLASTOptionSetGapParamsBLASTOptionDeleteBlastDestroyErrorMessageBlastErrorChainDestroyBLAST_WizardOptionsBlkDoneBLAST_WizardOptionsBlkInitconvertValNodeListToSeqAlignListconvertSeqAlignListToValNodeListBlastInsertList2HeapBlastMatrixRescaleNewBLASTOptionNewExBLAST_WizardBLASTOptionNewBlastParseInputStringgetFastaStyleTitleBLASTHSPSegmentFromSeqAlignBlastClusterHitsFromSeqAlignFastaCheckDnaMegaBlastPrintAlignInfoBlastGetSequenceFromBioseqBlastPrintAlignInfoBLASTFilterOverlapRegionsBLASTAddBlastDBTitleToSeqAnnotExBLASTAddBlastDBTitleToSeqAnnotfillCandLambdaBlastGiListNewBlastErrorPrintExtraBlastErrorToStringBlastErrorPrintslp_callbackBlastSeqLocFillDoubleIntRevBlastSeqLocFillDoubleIntExBlastSeqLocFillDoubleIntupdateLambdaKBlastScaleMatrixBlastCreateVirtualOIDListBlastProcessGiListsBlastAdjustDbNumbersBlastConstructErrorMessageBLASTPostSearchLogicBLASTOptionValidateExBLASTOptionValidateFormatBlastParametersreaddb_parse_db_namesreaddb_validatereaddb_copyreaddb_get_dblenreaddb_get_num_entries_totalreaddb_get_num_entries_total_realreaddb_get_num_entriesreaddb_get_maxlenreaddb_get_filenamereaddb_get_titlereaddb_get_datereaddb_is_protreaddb_get_formatdb_versionReadDBGetDbInt4ListBSearchreaddb_sequence_hashbit_engine_firstbitbit_engine_numofbitsDB_Subsetis_EST_HUMANis_EST_MOUSEis_EST_OTHERSis_SWISSPROTis_MONTHis_PDBis_CONTIGreaddb_madvise_enablereaddb_madvise_typereaddb_madvise_sync_modereaddb_madvise_blockFDBTaxidDeflineTableSearchSeqidFDBTaxidDeflineTableSearchGireaddb_compare_basicreaddb_compareReadDBGetDbIdFDBTaxidDeflineTableFreeFDBPigTableFreeFCMDAccListFreeCommonIndexResultDestructFDBOptionsFreeSI_RecordFreeFDBDestroyMembershipsTableInt4ListFreeFDBPigTableNewbit_engine_arrInt4ListNewExInt4ListNewDBisProtDBNameInt4ListMakeUniqueInt4ListIntersectFDBAddPigInt4ListResizeInt4ListAddFDBTaxidDeflineTableNewreaddb_pig2oidFindDBbyGIGIs2OIDsGI2OIDreaddb_get_sequence_numberreaddb_get_totals_ex3readdb_get_sequence_length_approxreaddb_get_sequence_lengthreaddb_get_totals_ex2readdb_get_totals_exreaddb_get_totalsreaddb_preloadis_REFSEQis_REFSEQ_RNAis_REFSEQ_GENOMICFD_ConstructMultivolumeDBListFD_CreateAliasFileExFD_MakeAliasFileFD_CreateAliasFileScanDIFileFDFGetAccessionFromSeqIdChainreaddb_MakeGiFileBinaryPrintDbInformationBasicExPrintDbInformationBasicFastacmd_ParseLocationsGetAccListDBShiftCommonIndexDestructNlmCloseMFILERDBTaxInfoCloseOIDListFreeReadDBCloseMHdrAndSeqFilesSeqEntrysToBLASTBLASTFileFuncFDB_SEDataInfoFreeFDB_SEDataInfoNewFDBAddSeqEntryInt4ListConcatFDBFillIndexTablesNlmTellMFILEFormatDBCloseprocess_sepSI_RecordNewFDBDumpDeflineAsnFDLCreateAsnDFFDBGetDefAsnFromBioseqFDBDestroyLinksTableFDBBlastDefLineSetBitFDBAddMembershipInformationFDBAddLinksInformationFDBLoadMembershipsTableFDBCleanUpRecursivelyFDBCleanUpFormatDBInitFDBCleanUpInProgressFDBAddSequence2FDBAddSequenceFDBAddBioseqFastaToBlastDBFDBOptionsNewParseDBConfigFileCommonIndexInitReadDBBioseqSetDbGeneticCodereaddb_destruct_elementreaddb_destructReadDBBioseqFetchDisablereaddb_attachNlmReadMFILEFindBlastDBFileNlmSeekInMFILERDBGetTaxNamesreaddb_get_taxnamesNlmOpenMFILERDBTaxInfoInitReadOIDListInt4ListReadFromFileFDBLoadLinksTableFDReadDeflineAsnreaddb_get_pigreaddb_get_header_exreaddb_get_headerreaddb_get_deflinereaddb_get_taxonomy_namesreaddb_get_asn1_deflinereaddb_gi2seqisCommonIndexreaddb_seqid2fastaSeqId2OrdinalIdreaddb_acc2fastaExreaddb_acc2fastareaddb_ambchar_presentreaddb_get_ambcharreaddb_get_sequencereaddb_get_sequence_exreaddb_get_filebitsreaddb_get_descriptorreaddb_get_bioseq_exDumpOneSequenceDumpBlastDBreaddb_get_bioseqreaddb_new_ex2PrintDbInformationWithRIDFastacmd_Search_exFastacmd_SearchPrintDbInformationReadDBBioseqFetchEnablereaddb_new_exreaddb_newkFDBMaxNumVolumeskTaxidDeflineSearch_NotFoundISAMUpdateDatabaseISAMSetCheckForNonUniqueISAMSetDataSortedISAMCountLinesISAMNumTermsISAMGetIdxOptionNISAMFindKeysNISAMFindKeyNISAMSearchNISAMSearchListISAMSetUpCAInfoSISAMSearchSISAMFindAllDataISAMObjectNewISAMSearchTermISAMUninitSearchISAMObjectFreeISAMMakeIndexISAMCreateDatabaseB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Schäffer, Webb Miller, Thomas L. Madden, Reference: Zhang, Zheng, Alejandro A. Schaffer, Webb Miller, Thomas L. Madden, David J. Lipman, Eugene V. Koonin, and Stephen F. Altschul (1998), "Protein sequence similarity searches using patterns as seeds", Nucleic Acids Res. 26:3986-3990.Reference for compositional score matrix adjustment:Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein databasesearches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searchesusing compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.Reference for composition-based statistics:Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Reference for composition-based statistics:Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,Reference for composition-based statistics Reference for composition-based statistics starting in round 2:Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.Reference:Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14.Reference:Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. 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At+~.ZYYٮ=y..==$:f Av1`$/I'4OyA"@Yl2Y>NOTE:NOTE:BLAST database titleBLOSUM62BLOSUM45BLOSUM50PAM250BLOSUM62_20BLOSUM90BLOSUM80PAM30PAM70blastnblastxtblastntblastxpsitblastnblastpvecscreenmegablastpsirpsblastTSD%s;%s%slcl|gi|blastallPRINT_SEQUENCESBL_ORD_ID QUERYACGTRYMKWSBDHVN-TGCAYRKMSWVHDBN-myblastool.cUNKNOWNINFOWARNINGERRORFATAL%s%s: %s Unknown BLAST error levelOut of memory%s: EngineCoreNo hits are being savedBLASTOptionValidateExwordsize must be non-zeroWordsize must be 8 or greaterWordsize must be 7 or greaternon-zero threshold requiredMatrix: %sNumber of Hits to DB: %sNumber of Sequences: %ldNumber of extensions: %ldlength of query: %slength of database: %seffective HSP length: %ldeffective length of query: %seffective search space: %8.0fT: %ldA: %ldX1: %ld (%4.1f bits)X2: %ld (%4.1f bits)X3: %ld (%4.1f bits)S1: %ld (%4.1f bits)S2: %ld (%4.1f bits) This query has been filtered for human repeats. This filtering is effective for 70-90%% of all repeats. can't specify both expect_value and cutoff_sinternal error: buffer too smallInvalid input string started from "%s"Character '%c' is not a valid option%s %ld %.2f %ld %ld %ld %ld %ld %ld %ld %s %s %s %s %s %s %.2f %ld %ld %ld %ld %ld %ld %ld %s %s %s %s %s %ld %.2f %ld %ld %ld %ld %ld %ld %ld %s %s %s %s %.2f %ld %ld %ld %ld %ld %ld %ld %s %s %s %s %.2f %d %d %d %d %d %d %d %s %s The combination %d for gap opening cost and %d for gap extension is not supported in PHI-BLAST with matrix %s Matrix %s not allowed in PHI-BLAST BlastGiListNew: Out of memory CombineDoubleInt4Lists: Failed to allocate memory for gi listIntersectBlastGiLists: No lists to combine?IntersectBlastGiLists: Failed to allocate memory for gi listBlastComputeProbs(): Unable to create Score FrequenciesMatrix has positive average scoreBlastCreateVirtualOIDList: Could not allocate memory for global oidlistBlastCreateVirtualOIDList: Out of memoryBlastCreateVirtualOIDList: Missing oidlists to attach virtual_oidlist%s database restricted with gis not present in the database. Restricting the entire databaseBlastProcessGiLists: Out of memoryOnly alignments to %ld best database sequences returnedexpect value must be greater than zeroBLASTN penalty must be negativeGap extension penalty must be non-zero if gap open penalty specifiednon-zero threshold not permitted with blastntwo-passes not available for blastnValid wordsize range is 2 to 3penalty or reward can only be non-zero for blastngapped calculations not available with tblastxPHI-BLAST cannot use ungapped alignmentsparameter adjustment not supported with ungapped alignmentslocally optimal alignments not supported with ungapped alignments-R option is available only for psitblastnOnly discontiguous template lengths 16, 18 and 21 are supportedOnly discontiguous word sizes 11 and 12 are supportedAllowed discontiguous word types are: 0 - coding, 1 - maximal, 2 - two templatesQuery concatenation can only be used with blastn and tblastnGap Penalties: Existence: %ld, Extension: %ldNumber of successful extensions: %ldNumber of Hits to DB: 1st pass: %s, 2nd pass: %sNumber of Sequences: 1st pass: %ld, 2nd pass: %ldNumber of extensions: 1st pass: %ld, 2nd pass: %ldNumber of successful extensions: 1st pass: %ld, 2nd pass: %ldNumber of sequences better than %4.1f: %ldNumber of sequences better than %3.1e: %ldNumber of HSP's better than %4.1f without gapping: %ldNumber of HSP's successfully gapped in prelim test: %ldNumber of HSP's that attempted gapping in prelim test: %ldNumber of HSP's gapped (non-prelim): %ldeffective length of database: %seffective search space used: %8.0fframeshift window, decay const: %ld, %4.1fBBBBpBB9B.?Y@HzX@(\X@9B.?Y@HzX@(\X@??i@ffffff???9B.?x $BGD ?;<BBB E(D0A8DPF<BBB B(A0A8DP4|BEB B(A0A8<H0*J],BHD D($WW$WAAD }A$JQ0<BBB B(D0A8DP4D$J^@JDD$<ADD A $ADG <BBE E(A0A8F`,BJI A(F0<BBB B(A0A8D,JLVP,MBEI I(D0< BEE B(A0D8GP <`BBE B(D0D8J$JO$D$AFL <vBBB B(D0D8IrA<BEB B(A0A8G$JQ0<fBBB B(A0A8G#A$OBDA <BBB B(D0A8D`$JZ@ $ JQ0$bJY@$,WQ@<JBEE E(A0C8F`<BEE B(A0D8D<BBB E(A0A8G$ADD AJG $DACG <ZBBE B(D0A8Fp<BEB E(A0C8Fp<pBGB B(I0A8F<BDB B(A0A8D<BBB B(A0A8D<BBB B(A0A8GD$VL0< BBE B(A0A8G,JMQ`HAG <' BGB B(A0D8GzRx 4BGD T?l;4BBB E(D0A8DPF4BBB B(A0A8DP,<|BEB B(A0A8l<H0*J]$BHD D( WW,DWAAD d}A|JQ04BBB B(D0A8DP4D$J^@,JDDD\<ADD |A ADG 4BBE E(A0A8F`$BJI A(F04,BBB B(A0A8D$dJLVP$MBEI I(D04 BEE B(A0D8GP 4`BBE B(D0D8J<JO\$DtAFL 4vBBB B(D0D8IrA4BEB B(A0A8GJQ04<fBBB B(A0A8Gt#AOBDA 4BBB B(D0A8D`$JZ@  $ JQ0DbJY@$d,WQ@4JBEE E(A0C8F`4BEE B(A0D8D4BBB E(A0A8G4ADD TAJG tDACG 4ZBBE B(D0A8Fp4BEB E(A0C8Fp 4 pBGB B(I0A8F4T BDB B(A0A8D4 BBB B(A0A8D4 BBB B(A0A8G D VL044 BBE B(A0A8G$l JMQ` HAG 4 ' BGB B(A0D8G "w")w)-w-w zUUU TTT 3Q3KVKQVQVQ 3R3q\qwRw\R9nSwST TTPSUPVTwwww w(w0w8;wU4\4;UT;DQ6]6;QR;X;U;U1S:_R;R2Vwwww w(w0w8swU2UFXUdsUT.TF[TdsTQdsQ\^U\U`P`s^MSPDp^r_wwww w(w0w8UUUT_TPVPVPVPP^w<w8U8<U8T8<T 8Q8<Q;S8X8<XIlPnpPpTTrPP U<MU T<MTQPQ<MQRP<?P@KR @U@Z @T@RKMRPRwRZwZ^w^bw b%w(PUUPTl}TT %TPhQhVVQV %VPhRhz\z}R}\R%\PhXh|]}]X%]l[l}T TxV}V VU U#%U0YlYY%YSPPlvPSSSP %P3[l[[%[;QlQQQ %QUUU #UXZ%XSwY}S%So-ZlZ%ZT0UGU0TT{T0QGkQ{Q0RGR0OXOjVjuXuV0OYOeSeuYuS`uR{R`o\{\`t]{][`PPPP[uY{YY``X`uZX{Z`uTT;QVuZyZGZ`u[{[ ! w! 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Version %s [%s] Started database file "%s" %s.%02ldJULIANA - ALTERACAO NO NCBI %s.00%s.00.%cinhrsqndnisdsidipdpi%02ldgi|0|%s: zero gi strippedunknownFDBOptionsNew: Out of memorydblist.txt/%s%s%strueTrueTRUEtT1yYReadDBBioseqFetch; BLASTDBBLASTNCBIrbtaxdb%s.btiCould not open OID mask %s .Not enough memory to read %s LinkBitNumbersLinkFilesCould not read %sLink bit %d: %ld gis from %s Unable to open %sestNCBI sequence id: NCBI taxonomy id: Common name: Scientific name: TaxNamesDataASN1_BlastDefLinegb|%s|gb||%s%c%s %s%d %s No accession found for oid %dCommonIndexINDEX_SYSTEMISAMcomindex.mmFailed to create NISAM objectFailed to create SISAM objectCompletednrFile names::Date: Version: Longest sequence: res bpPIG %ld not foundERROR: Could not open %sEntry "%s" not found %s.pal%s.pin%s.nal%s.ninSpecified bit shift %d is not known Recursive situation detected with %s, ignoring alias fileCannot add negative taxonomy idFailed to read gi/taxonomy id pairs from %sRead %d gi/taxonomy id pairs from %s Failed to read Seq-id/taxonomy id pairs from %sRead %d Seq-id/taxonomy id pairs from %s Failed to initialize PIG searchon %s ISAM Error code is %d Failed to initialize ISAM searchInternal error inside GIs2OIDs(), we expected to find this GI into the database Nlm_MemMapAdvise(0x%x, %u, %d) failed: %sFD_ConstructMultivolumeDBList: out of memory%ld %ld %ld %ld %s %ld %ld %ld %s %u Error occurred while parsing %s, line %d (read %d fields instead of the expected %d)Starting location is negative, setting to 0Ending location is negative, setting to 0From location cannot be greater than %ld. Ignoring sequence location. **** ERROR: Too many invalid Gis/Accessions, parsing aborted Gi/Accession "%s" is too long **** %d invalid Gi%s/Accession%s present in fastacmd request Specified database name is NULL Not enough memory to allocate main formatdb structure. Formatting failed. Sequence id "%s" is not parseable. Formating failed at %s SeIdSetE2Index failed. Exiting.. Error converting ncbi4na to ncbi2na. Formating failed. FDBFinish: Empty %s database... Failed to create ISAM object. Failed to create index. Possibly a gi included more than once in the database. Failed to create index: ISAMErrorCode %ld. SORTFiles failed, change TMPDIR to a partition with more free space or use -s optionCreating of ISAM object failedCreating of index failed with error code %ld Failed to create PIG ISAM object. Failed to create PIG ISAM index. Possibly a PIG included more than once in the database. Failed to create PIG ISAM index: ISAMErrorCode %ld. Formatted %ld sequences in volume %ld tax_callback() failed for taxid %ld. Formating terminated abnormaly structure without a seq_id and a titleNo number of membership bits used found in config file. IgnoringMembership bit %d: criteria for '%s' determined by function '%s' Removed single-volume database %s Cannot prompt for answer if input to format is stdinWould you like to clean up %s.* files?No database name was specifiedNot enough memory to initialize main formatdb structure. Formatting failed. Error initializing Lookup structure. Formatting failed. Not enough memory to allocate PIG table structure. Sequence number %ld has zero-length! Closing volume %s with %ld sequences, %s letters(.%csq file = %ld bytes; .%chr file = %ld bytes) BLAST database exceeded %d volumes, please adjust the -v option to formatdb (number of bases per volume)%ld %ld %ld %ld %s %ld %ld %ld FDBDumpDefline() failed. Formating terminated abnormaly%ld %ld %ld %ld %s %ld %ld %ld %s %u FDBDumpDeflineAsn() failed. Formating terminated abnormalyCannot add sequence number %ld (%s) because it has zero-length. Error in readind Bioseq Formating failed. FDBOptionsNew: input file neededFDBOptionsNew: SeqEntryLoad failedFDBOptionsNew: fdlobjAsnLoad failedCould not open Common Index file. Probably wrong path specified Argument to FindBlastDBFile is longer than PATH_MAXRDBTaxInfoInit: Unable to open %sRDBTaxInfoInit: Invalid databaseRDBTaxInfoInit: Not enough memory to load index tableNo number of link bits used found in config file. IgnoringIgnoring '%s' listing because it is emptyReadDBOpenMHdrAndSeqFiles: failed to map files Not enough memory in FDReadDeflineAsnTaxonomy information not encoded for Seq-id '%s'ftp://ftp.ncbi.nih.gov/blast/db/taxdb.tar.gzTaxonomy information is not available for Seq-id '%s'. If you have not done so already, please update your copy from: %s There is no BlastDefLinePtr in rdfp!readdb_get_defline_ex: Failure to read defline ASN for %dFailed to initialize search. ISAM Error code is %d Failed to access string index ISAM Error code is %d Failed to search string index ISAM Error code is %d Failure to read ambiguity informationFailure to rebuild DNA in readdb_get_seqeuence_exreaddb_get_descriptor: Failure to read defline ASN for %dCould not convert Bioseq to FASTACould not retrieve database lengthFeature not available - Cannot dump subset databases and real databases at the same time.Feature not available - Cannot dump databases with gi filesBlastDBToFasta: Oid %d is not in this maskThis mask database does not have an oidlist! There is probably a wrong ordering problem in the ReadDBFILEPtrsreaddb: wrong version of formatdb was used to make database %s.Failed to read PIG ISAM object%s; ERROR: Cannot initialize readdb for %s database ERROR: Cannot initialize mismatched protein/nucleotide databases '%s' Taxonomy information is not supported in your version of the blast databases (version %d). Please update your databases and download the taxonomy blast database files (%s) Taxonomy information is not available. Please download it from %s ERROR: No valid Gis/Accessions found. Exiting... Accesion search failed for "%s" with error code %d dx 5      &]%(,$]BDA  6%A   +D$J[@ hN N MJG ,XBEA A(G0:D$D$4AAD "DOD$DAAG &D8D$DMARAtS  AF AF ,BBD A(G D4pBBB D(D0$JL UN gN $EJP0<)BBB B(A0A8G4BEB D(A0GP$JL <BBB B(A0A8D$J]P4BEB A(D0< BJE E(A0A8F`DDDAT $J[0,JMQ@,bJLVPKAA%A$2J^`<BBH J(A0D8GhD0DD0<`BBB B(A0A8GSGS D $CAFG 8AG <BBB B(A0I8J,=JMQ@9D $AEG0$AFF@<WBBB B(D0A8G4BEE D(A0D@$sBDA wGeD;D$BGA ,JLTMA$%AKD $JL $JL $6AGD $D<pBDE E(D0A8G$AAG <BEE E(A0A8G$JT,J J^$>VOqN05D,JMQ@,"BCD J<CBBE B(A0A8G<BGB B(A0A8G$9BGA $BFA 4BBE D(A0G@4BBE A(A0G@<LBSB B(A0A8G, J^A<xBGB I(D0A8N $JT $JO ,BIA D(G!<6 BEB B(A0A8Gq<BEE E(A0A8J$JY` NP$AGGP<BEB E(A0A8G ,bJMQP<{BBB B(A0A8G@$X0,lBJD A(L02D8A$5ADD $vADD [A<BEB B(A0A8D@4BHB D(A0$JL $UJL0{,`Ja$JL 4.BLB A(A0G$JL0<BBB B(A0D8GH<`BSB B(A0A8G$,BBG D(G ,uBDA D0< BEB B(A0A8F`RA4BBE A(C0J,pJLT%D ,JaBN $J[`$OJ]P$JP@<+BEE E(A0A8DP,Ja$JL $JY0,?Ja$tJK ,JLQ@$JK $JL0,JLQ@<BEE E(A0D8Dp$KADG < BEB B(A0A8G,JLT,zJ]<BEE B(A0A8D` <BEB B(A0A8G<=BBB B(A0A8G , JacDP#D1A$YLP$J[P,jJa zRx 45Ld |     $< T&l]%(,]BDA  64%AL d|   $<+D$TJ[@| hN N MJG $XBEA A(G0<:DT$Dl4AAD "DODDAAG &D 8D$$D<MATRAltS  AF AF ,BBD A(G  D,$pBBB D(D0TJL tUN gN EJP04)BBB B(A0A8G,BEB D(A0GP,JL 4LBBB B(A0A8D$J]P,BEB A(D04 BJE E(A0A8F`D,DDD\AT |J[0$JMQ@$bJLVPKA A %A$4 2J^`4\ BBH J(A0D8G hD0 DD04 `BBB B(A0A8G S GS , D D CAFG d 8AG 4 BBB B(A0I8J$ =JMQ@ 9D  AEG0 AFF@4< WBBB B(D0A8G,t BEE D(A0D@ sBDA  wG eD ;D BGA $, JLTT MAl %AKD  JL  JL  6AGD  $D4 pBDE E(D0A8G< AAG 4\ BEE E(A0A8G JT$ J J^ >VO qN0,5D$DJMQ@$l"BCD J4CBBE B(A0A8G4BGB B(A0A8G9BGA $BFA ,DBBE D(A0G@,tBBE A(A0G@4LBSB B(A0A8G$ J^A4xBGB I(D0A8N <JT \JO ,|BIA D(G!46 BEB B(A0A8Gq4BEE E(A0A8JJY`< NPTAGGP4tBEB E(A0A8G $bJMQP4{BBB B(A0A8G@ X0$,lBJD A(L0T2Dl8A5ADD vADD [A4BEB B(A0A8D@,BHB D(A0DJL dUJL0{$`JaJL ,.BLB A(A0G,JL04LBBB B(A0D8GH4`BSB B(A0A8G$,BBG D(G $uBDA D04 BEB B(A0A8F`LRA,dBBE A(C0J$pJLT%D $JaBN $J[`$<OJ]PdJP@4+BEE E(A0A8DP$JaJL JY0$$?JaLtJK $lJLQ@JK JL0$JLQ@4BEE E(A0D8Dp4KADG 4T BEB B(A0A8G$JLT$zJ]4BEE B(A0A8D` 4,BEB B(A0A8G4d=BBB B(A0A8G $ JacDP#D1A YLP$,J[PTl$jJa (]R`RPPPP"P2LPTQTQPU Q&CQH]Q X ]X R]R`qUUbnPnqQPPPwwwmw  U i\5KPXlP.fSwwUSUBNPQSPPPwwUUPPww+U+iUUU+T+TTQR^R\Q\^Q^9CPPP2W__4\XcXP4\UiU4\R_RP4M]]4CVV49PPPUTQUTUT .w.w 6U6GVGLULWVWcUcV hTT=LQuQwpw USUSUpSTVTVTpVpww pUVpTSwwww w(w0USSUT]]TV $w$Zw )U)0S0:U::S:DUDQSQVUVWSWZU`dwdw`iUixSx}U}SUwwww UUVSSwwUSUSU  w O w U N SN O UP Q wQ R wR Y wY w P ^ U^ S U^ V w w U S U U w  w U  S  U $ w$ D w ) U) 6 S6 ; U; A SA D UP Q wQ w] S S U w w U S S  w t w  U T V^ f V! 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Non-unique or not-sorted string IDs found %d line: '%s' %d line: '%s'NIsam key file %s not in sorted order! unsorted or non-unique elements:#%ld, #%ld : %ld, %ld unsorted or non-unique elements:#%ld, #%ld : %ld, %ld Creating of ISAM object failed No ISAM delimiter char present in input. Line: "%s" Invalidly formatted input file No ISAM delimiter precent in the input Line: "%s" Prevterm: "%s" Failed to dump entry. All failed! Term: "%s" Invalidly formatted database. Database creation failed. Value = "%s", Field = %ld Failed to dump entry. All failed! 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;;%[;&; ;'<<<(K<]<)j<$<<*<)<= = = C= e=r==+= 0=,= = = =  X  7db_slist.o/ 1276618064 561 502 100644 7536 ` ELF> @@ Hx1ҍBHtH9}fDHHG@HGHGLHc@ID90|LDxHcID90}II@DIcHLDHD90|AHLxIcHD90}HHAfDLHc@ID90~LDxHcID90II@DIcHLDHD90~AHLxIcHD90HHAfDHGfHGHpHGHPH;tfDHGHP1H;tHBHGHPHtf.HGHP1HtHBDfDHGHpH;5t-x%1HTHHH9tuA9HHt}ߋDfDHGHPH;tHWfHGHp1H;5t2x(1HTHHH9tuA9HHt}HFfHGH@HGH@S@HHHCH@H@HCHPHCHP HCHP(HCHP0H[fDfDSHHH@H@HHHBHHB HHB(HHB0HHB8HHB@HHBHHHBPHHBXHHB`HHBhHHBpHHBxHHHHHHH[USHHHW/HzH;=Htbx7E111@HLIcHH9|uHDAD9HD}HSHGHPHHcHH9Tt +H[]Å~HcH9TuDUHSH(H]HHcfHL91|H@@ AWIAVMAUATIUS1҉HAA|$ LLL$T$ H|$1Hc1҉LL<fЍffHT$L <efЍfQfH\$HT$Ll$HHID$$L~>A1H<A>~_A1A>A1RLE1E11ɺ$LE1E11ɺ/D$($tnfD^LE1E11ɺ$tD3LcùLcD$(oLcùfAW҉*fAVEAUATAUSˍ,HXYH|$ HcHfDL$fD$LD$(]D$(D$(EHD$0~1DHHD9uHHIyEED$DD|$EEIHD$0Dd$ D|$H|$(LHILLALHI'HHHPB<vptkE1E11ɺ#$RH]H\$@HD$@HHHuHD$0HX[]A\A]A^A_1ɉADHHHHD$$}LDL$ DD$DHD$D$&$T$>Ht$0HL$PAMH$LHD$0IIEHuHE1E11ɺ$_E1E11ɺ-$u̹뱹E1E11ɺ$hJ,E1E11ɺ$t IE1E11ɺ$uHD$0E1E11ɺ$uƹH\$Ld$ILl$Lt$L|$Hl$HXAfL$fDD$EDl$`HD$ MAT$B<H!1ɉ@@ HADLHHH*DL$DD$HxADD$HAlj$$I$HL$ HAI1HIHH]HHuLH\$(Hl$0Ld$8Ll$@Lt$HL|$PHXÀE1E11ɺ$t E1령E1E11ɺ$uE1E11ɺ$t^E1HE1E11ɺ$2dustdust.cInvalid residue converted to 'A': %ldfailed to allocate triplet bufferTotal invalid residues found: %ldno sequence location given for dusting@Y@?memory allocation errorval node new failedcan not find next seq locno bioseq idno bioseqnot nucleic acidsequence port open failedzRx 4BEE B(D0A8M4ToBOE B(D0A8I4DBHB E(D0A8D4BEB E(A0D8DP4 BEB B(D0A8D$4J``GCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.8.rodata.cst8.rodata.str1.1.rela.eh_frame.comment.note.GNU-stack @0 &( ,4128@M2axX\. k.tH  hy # D-p  5:? 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reasons cited in publicationreasons given in citationgenetaxonSite-refsitesmapNCBIanticodonUnrecognized choice: %dexperimentinferencemisc_featureputativeunnamed, and translated productsAccession %s is product of pseudo CDSBackbone entry source with bad OrgRef feature: %szRx >4LAd6|d*ANPADDP2D$,JaT lsBGA ,BHB A(A0ADD UJV,]04BHB E(A0A8GTX0tBAA [D{AAD b@eS@ 6N@$$>BBA A(D0,LBHE A(A0|`JQ0DX0\AAD kD, BEB A(A04<BBB E(A0A8DP$tJ[@BDA D$SJ^P$dJ[@$$sJ[PLUJL lD47BBB B(A0A8D`4BBE B(A0A8D@4BBB B(D0A8DP4,rBBB B(A0A8D$dJZ`$PBED D(D0]0 4yBBB B(A0A8D@4$WBBB B(A0A8DP\b@|ADG b`4BBB E(A0A8DX4BBB B(A0A8DP$,EBEA A(D0T)Al&A4BBB E(A0A8DXBDA &AL bP FAL < bP$\ (J[@$ b4 BEB B(D0A8Dp JQ@4 BBB B(A0A8D`< BAA 4\ <BEE E(D0D8D4 BBB B(A0A8Gp AG , =BEE A(A0, ^BBB A(A0$L J[pt A4 BDE B(A0C8DP4 BBB B(A0A8D 4 lBBE E(A0D8GL d GCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rela.rodata.rela.eh_frame.comment.note.GNU-stack @:@<&|,3 12@2xZT؋ O`ax \x kp.t(3 ȵq PA6/dDPR@f6Pe?s U` ,& AZPmP[0`\ $U5y;=PB`DpFEI))I&: JNM`@N&q3{Z`g<ksxA~l   > @P*V)6RA`v@2+9EQ gy*BTp cu"1{<Wbq|> @0`,;HU_{pk0$4CPY@do~ S"dp#s  P&$ 0 &7= H W  )a r *|     -r    0  2P ' 8 G U e w  3    4    6W% 1 = L Z pOe 0QFn   PU(      a  `c `f , D Po[ u  p=    `r^        $ 1  ; 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A)ʃ HcHHqJ8XfATHcIщHUHHHHSH\=HHHHH1HH=uH= H=H=H=FLHE11H9Hr|E1!HcJHBAIH9rSHH9ٺN4HAtQHcyJHBXIH9sIcJIHI\HHHHHH 5HHHHcI\1fHH=uH=FH=yH=H=LLE11H9Hr}E1"HcJHBBIH9rSHH9ٺN<HAtQHcyJHBXIH9sIcJIHI[HHHHHH[]A\HHHHHHH VUUU)ʃ HcHHD VUUU)ʃ HcHH\ȺVUUU)ʃ HcHH0" VUUU)ʃ HcHH@ VUUU)ʃ HcHHȺVUUU)ʃ HcHHYLCould not find segment containing %ldToo many exon possibilities were encountered; check your work, thenhave programmer raise MAX_EXONSTriplet table allocation failedFFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGGNucleotide is too short to encode proteinNucleotide length is too shortNote: nucleotide sequence %d is too short to code for the entire protein. dna length %d and / or protein length %d too short No known genetic code for suggest to use.Dramatic Suggest failure: Please check reverse on both aa and DNA sequences. Please check that the proper sequences selected. Since Parameters were set, also check them on the verify form. FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGGFFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGGFFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGGFFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGGFFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGGFFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGGFFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGGFFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGGFFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGGFFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGGFFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGGsuggest.cAllObjLoad failedSeqCodeSetLoad failedGeneticCodeTableLoad failedProtein length is too short %ldL@.AcAחA?zRx D44BEE B(D0C8F@4l5BDB B(A0A8DpD4$BEB E(A0A8GuADD 4WBBB B(A0A8GLBZe GCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.8.rodata.str1.1.rodata.cst8.rela.rodata.rela.eh_frame.comment.note.GNU-stack @C!<1&! ,P"12P"@2!(pO((a( \mn@)hi`o x*.**/- H8 H. ;GO^xi8s0}5`(P@  17 =CI Ogs ~ #8$IXguu0 W+F\y suggest.ctopframebotframeusingBatchFramesgenetic_codeAddIntervalnum_ntsnt_len_offsetsnt_dna_lennt_orientnt_id_seqsearchshiftframetriptaborientationp_seqtripletTablegeneticCodesdbaa_seqdbnt_seqaoriahzaascmin_exon_from_formmax_num_ntslast_orientexceptionsuggest_get_frames_init.LC12.LC22.LC13.LC14.LC15ClearBatchSuggestFramesNlm_MemFreesuggestRecNlm_MessageintlistTotal_lenNlm_MemGetm_topm_stkTooShortMin_valMax_valcopy_m_stk_entryNlm_ErrSetContextNlm_ErrPostExInitSuggestAllObjLoadSeqCodeSetLoadGeneticCodeTableLoadGet_Genetic_CodeNlm_StringSaveNlm_StringNCpyNlm_StringCpyClearSeqRecNlm_BSFreeProcessDataNlm_BSLenNlm_BSSeekOutProteinIDNlm_BSReaddna_seqrev_seqLook_for_stoppro_lendna_lensprintfOutLocationfix_single_mismatchesfind_best_setremove_redundant_intervalsfix_single_unassignedcombine_with_long_mismatchesfix_overlaps_by_splice_sitesensure_consistent_setvxSetBatchSuggestFramessuggestOut ..&-2.9@E.LSX._fk.r/\yC./\|t 0'|.tP4d,|123\3h1 `y$45BNY6z785595#?4k p  |: (;5=>?3L $01  ;0I S0a 3k0?AMB\Cw $|C CEE.. .I /DS .Z /a /Dg /Pp Gw /4 G /4 H /, H I /4 J 3 /, /D J /\, /T7 /$V b 0j /#r (~ 0 /S /t /D /` /d /h /Y . /D /P / D /0 D /\ . # /\K 3\ 5a 3h $r $ 3 $ 3  8 K L $ X ` h  2$ 1l /ps /y      /t M /d 7 /h 8 / K / L /T N /D  G  3% 1 ,6 3= I 4R 3Y e <n 3u  t 3 O | , 4  / 4 G /  H /"J0t;,AOMX/eJlt| O07788NO' 6O(616@N, k%P/   :;ON   ):4N;O@ N;U5`.g5n$.3 $bluC\dlC `. `C\!(d/6l<SC` `e.m `}4N(2782O86Q$5$E.^$f.p$u.|,$.4,.<4.t<.|t.|87RN6 S6T$+L2K7U=6BVIPWL^KcWiNnXu455O44D I  U:^ l;r   : ;   :, H;)6.*@6b g  l:y ;O8OK YYYYLYHYY#Y|-Y7YAYU `m Y Y Y ` ` OL.; YQY[YeYLoYHyYYY|YYY/\ ` Y Y9 YL `l `78O7O3 ` `%+76BO\3g `z `OX`h * Y@YJYTYL^YHhYrY|Y|YYY[ck `& Y2 YH YT `q `\dlOX`h YY#Y-YL7YHAYKYUY|_YiYsY~[ck ` Y  Y" Y. `K `h\ovd}lX`hC/\/\O 3 d" O@ 3J lz 3 \ O 3 d O 3 l*!34!\      P( 0 8 @ H (P pX ` h p Hx  8 p     0 P suggslp.o/ 1276618067 561 502 100644 9984 ` ELF>@@@ HtH>t?uHGHHGHcH@AVAUIATUHSH HRHIH$E11ɺHDŽ$L$M11ALHIH}H}f H]HA}IEH8H$1LwAQ<TFHӀUEf~H}H1LHþHfxH}HH}H}H$$H}1HE$E($HcHHHE Hc$HuƄ$TƄ$AƄ$AƄ$GƄ$KƄ$CHƄ$YƄ$SƄ$BƄ$WH9Ƅ$RƄ$DƄ$MƄ$HƄ$VƄ$NƄ$-s"HHHH9rfH []A\A]A^I>0A~HHEͿ HHE봾HHHEAWAVAUATUSHHHHHWH{ HCHVH@HIx?<HHHHHHHHHHBHHBHHBHHB HB(B,B-HHHHHH[H1H@ H=@HĨ[]A\A]A^A_ËB9B :B;B3 E1111HA;HcHHIE11ɺHHH$H=|H=ECD$ D$@I>11ADŽ$HIrD$E1L<ЁBڃwB؍C*@Ńv@u -uD޿Hu@OUC-8IAfAT>L烄$<fL$~[=t.ID*DfxH=Ht$$H=H$$D$HHtIH8HCHHHu @HHBHuHZD$ ID9|$ LH<$D$~rH=1HD$XH{dH=Ht$AE1HqLH{HHjLT HHQfDfDUSHH8HtTHtO$HD$HHD$HHD$ʼnD$ HHH8[]H81[]AVAUATUSHHL`(II$HuHE1E1HŋECECES H Hf~tpHIHftZH91HEMHht?IFH[IHuMt2I}t+1LhID$8[]A\A]A^1IE1Ml$8[]A\A]A^fDAVAUAATUSL7H@HE@H1I1PID$LcH HDHfE~tHIHftH91HCIF(H]0Hu %fDHHHuH[]A\A]A^In([]A\A]A^@HSHHHHHHH߉H[H5H=H[HHHNNNJOzRx 4 ,LBBE A(D0G4|BBB B(A0A8JmACGP,BBB A(A0,BBE A(A04DL"DGCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rela.eh_frame.comment.note.GNU-stack @ h &$ ,@ p 12@ EH `@(& O .X  h  `_  $0+ 5A@0 P]hq(3AMmaz    "".FSsuggslp.cCheckForBioseqBuildListGetDNAi4GenCodebatchNucPtrbatchNucSeqRecSeqEntryListSeqPortNewSeqIdDupSeqPortGetResidueNlm_BSWriteSeqPortFreeNlm_StringCatNlm_BSLenNlm_BSMergeNlm_MemGetNlm_BSNewSuggestClientServicesuggestOutsuggestRecGet_Genetic_CodeSeqAnnotNewProcessDataBioseqListNlm_StringChrNlm_MemFreeSuggestCodingRegionSeqMgrGetSeqEntryForDataOutLocationintlistSeqIntNewValNodeNewOutProteinIDSeqFeatNewCdRegionNewGeneticCodeNewSetBatchSuggestNucleotideSetBatchSuggestFramesClearBatchSuggestNucleotideClearSeqRecClearBatchSuggestFramessuggestErrorfOldMsgHooke v<FO [r{*P`cdvls   '(-8C NYb$l(v)}tW(08@HPY d-h?pRt]`gdql{s    +3.J !X!,.=4Oi|<",DT ,*6<C"J@TPgq,"4$$ . &X '}   ( (/ *; +K ,U (^ q ({ <   8# @. 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EʋD$,AAD+|$,ArD0t$PD9D$Lg~&H311H2H9@ @uD;L$P|6HcD$PT$PH3H@H H1HA9@ @}HCHCHC Ic1|$'HRLHT$H<A8tshAOA9|,HcH@H+slB4+CpADHA9}IcH@H|$'ADBDBD AD  CpAD8L$0+L$(DAD8D$XAL$T1D9d$TE)A~ AIcHt$HT$@HL$Dt$XDt$,AHS`LHIH C>HHDJ~Ht$8H02A4A9~ B DΉB+{pD;|$PBDCE~D+Cl9ADBD AD;l$PB4|DL$PEWE9}DMEWIcH@H H E9CHT$8HL fDAAQIAHE9~\AqA9|9}9CA+Sp+{l9~A׉C+Cl9AA AIAHE9ED9CHSN BHC8B A HS BHC@B CHt$8DAH01A4D9v9nHCT$XBHC0B +Ch9~!HCHSAAHC0HS8B B"+ChA9}!HCHS AAHC0HS@B B"DkDiDi1+spSl)9ƉDM)9qHEJD9CDHt$8HL0AAQIAHD9|^AqA9|9} 9}uCA+Sp+{l9~A׉C+Cl9AA AIAHD9}fDD$XID$49D$XLA AA AA9}UHCHSBBHC0B A|CAD-AHHHDkDh DhHC HSDBBHC0B ,|$&QAԉT$\|$&WHcHH@l1ҋL$0+L$49L$LL$HHCPHc͉$4HHHWDt$H9t$LHHHT$4HcL$LHD$8H\$$)H4HcAAE9EL)L$0HL$@)l$0HD$&E1H|L$0D$D$\H`[]A\A]A^A_øLl$PD+T$Px!H;EB11H9HD9ƉP Put$PA9|3ABH;HH@H H9HA9@ @}HCHcHCHC HHHHHGD$4DET$4HډHHH`1[]A\A]A^A_ËoHHD$LL$0HcH\$$t(D$&)HcD9DN)l$4Ht$8H|$@T$4EE1D$^D$\H`[]A\A]A^A_H1H;T$4ǃuHH`1[]A\A]A^A_Dd$PE~(|$PH311H2H9@ @uD;L$PHcD$PT$PH3H@H H1HA9@ @}DEHHL$0t$00񉋨H`1[]A\A]A^A_Cp9/HcźH@HHh$ClAD8D\$LED$&DL$LDD$,H\$AD$D$'$L$0T$4Ht$8H|$@D$\H`[]A\A]A^A_{p9|$\kHH.HHH9DL$LAD$'AHt$8H|$@H\$D$AD;D$,DLD$,A )$-DE+HHyHH+T$4t$LDL$(UD$'H|$@H\$D$L5;L$(AHt$8$DNADEHHHhHT$0HHHHHD$&DD$LDL$(H\$AD$D$'$HHxHHHHHfH\$Hl$Ld$Ll$ALt$L|$H8AIDAL$@H|$(L$$AADŽ$L$$H$H$D)AA9ƉM9O1ɅOAAA9AN9‰MHx1E1E1O$tk1H$H$L$L$ L$(L$0H8E1E11ɺT$u11ҿ1BD-A9B+A9|EEE)؃zxHcH<HHD$@AEHHHD$0H|$0HD$pH|$0HD$xH|$0H$H$HD$0HHHHD$8H|$8HD$PH|$8HD$XH|$8HD$`H|$(H$HD$@AALDDHD$D$$1D$D$L$LE11E9D9H|$@H$H$H|$pH|$PH|$xH|$XH$H|$`9%E1E11ɺ$u1LcLcù1ҿ1WELA6$D$IF$H$u+HT$(AIc HcAIHD)A)IN1E11fDHT$(HAH$DŽ$AHIDBT?HI4E9u}H$H$HL)H]E&DIF$H$D$$-DDA)))"bandalg0.cThe band does not include (0,0) grid pointThe band does not include lower cornerCheck_Score = %ld align_score = %ld zRx 4GBBB B(A0A8D$TTTGCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rela.eh_frame.comment.note.GNU-stack @/ &p,p12p @2}TxO0 ^x.gw   ^ G  P'9GRbandalg0.cg_band0_aligngband_linearNlm_ErrSetContextNlm_ErrPostExNlm_MemGetNlm_MemFree' ,  8 ?      0 &:Ne@MZdnx     X X Pbandalg1.o/ 1276618057 561 502 100644 4424 ` ELF> @@ AWAVAUATUSHAEqH$Ht$8މL$4H|$@D$lLD$(AA)A9DMA9DO1EDOAA9D$4ND$49‰MHx E1E1E1M$tG1HĈ[]A\A]A^A_E1E11ɺR$uùD11ҿ1멍D9D$4A9D$4|T$4!\D}E)AE_IcD\$LH<HHD$`CHcD$\HT$LHD$PT$\IHcHL$PIcE1Ht$HHD$IEAHIEIA9uD$XD)d$XLcl$XLL$`L\$PDD$lKDmEDD$hHHD$ AIB(DD$XAE9HD$`|$lIcHt$`EAHHD$pHRH ƉD)+t$hL\$PDAq9DHIHE9}HT$HL$`t$4HDŽ$HRHT$pHT$ )Ht$|DDD$h؉BABHHD$$B9D$|A)ǃ|$X~ l$XLcl$XH$LD$@LL$(H|$`BDB,"T$XMKDmLDLDžO~Ht$8HE1A9~AD$X+t$h~D)9HL$pABDHD$PL$LJLD DT$XHT$`AIcE9H@L HyL$XLD$8D HI-9A D)D)AI IHAIE9|XAAAIA9|9?A+T$hD) 9~1D)9:AIHAQIE9}H$Ht$H9$V|$4EigfffHcAIIE1E13AtqAAAAIAHL$PIcIcH<)‰э)Au)ЃuAAA뉅^H$l$lAމ14+DD)A1D)AIIH|AIHIfHD$pBtFAADH$xcH11I"t8u E1HHD9t5uօZuuمEHHT$PH:H|$PLE1H$E11A9|Z;|$4|TE9UE1E11ɺq$1McMcĹ1ҿ1u7LL$@AL\$8IcA LL$(HcAID$HcD+d$lAA)H$1E11HL\$@AAHl$8LL$(HBDT/HI4A9u:EHuDL$4L$EEDt$lDt$4uu@D\$lA)AA)E)+H|$`H+$H$DH(ILL$pobandalg1.cThe band does not include (0,0) grid pointThe band does not include lower cornerCheck_Score = %ld align_score = %ld zRx 4BBB B(A0A8IGCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rela.eh_frame.comment.note.GNU-stack @  &\,\12\ @2h}TPO0 ^8 .gf f w` h  S  .<Gbandalg1.cgband_quadraticNlm_ErrSetContextNlm_ErrPostExNlm_MemGetNlm_MemFree        0  e    U_j     X  bandalg2.o/ 1276618046 561 502 100644 10056 ` ELF>@@ AWDAVAUATUSHL$pH$Ht$xT$t$@$8$H$PD$XD$`|$pL$hDD$lT$kL$j\$i@t$hDT$gDd$fE]lEup2T$tXD;L$pDŽ$OD$pDT$lD)$AD$$A!DEMeAIE0AR9$L$H$L$$w ~,$Iu11H2H9@ @uD;$Hc$|-HI$HIE@ @HA9}HIH$H$HIEHHV@HHCHCHFHc$|$hMeHvHt$XL C { $AE|A9|5HcH@HA+B "A+EpADHA9}IcH@H|$kADBD BD AD DCD |$iuAExA+CD DT$pD+$Dŀ|$iHcD$lH$H$H$H$CD D$$HD$xHHHHDŽ$DŽ$HDŽ$HDŽ$H$D$tHT$PHL$HH\$@Ht$8$1D$D;$)Ń$~$Lc$LT$XH$H$Ht$XD$D IU`D$DT$lHHvD$H $HIUDЅz~Ht$xH0249~B BAE+Ep$BD!AE$A+D9AD BD! AD D$D9$;$B4!|D$D$AE9}D$DUAH$H$IcH$HRH4IuE9H$H< FAVHFHE9~aN9|D9}D9AED‰FE)D)D9~ FAAED)9FF AHFHE9ED9(L$L$AEH$IT$IBH$HBIT$F L$BID$$HT$x~DH 9 D9L$H$I$D$D$H$L$HAA+EhA9}AHD$PL$HI$L$AAHD$HHI$L$AAA+Eh9}@HD$@L$HI$L$BBHD$8L$HIAB"E}D~D~DA+UpD)A9‰DMD)9AVHAD9H$IcHFAVHFHD9|aN9|D9}D9yAED‰FE)D)D9~ FAAED)9FF AHFHD9}Me|$guRD;$~H$VAA+);$~$FL$pD$$$$$H$H$$@|$fHcH@H,I,9$})J\$tDT$p$$$D$|$gt |$f D$D$1D$D+$D9$$ $Hc$IEPU     X (5BO\iv X bandalg3.o/ 1276618047 561 502 100644 4944 ` ELF> @@ AWAVAAUATUSHAAQH$Ht$ H|$(LD$D$dT$`DAA)A9DMA9DO1EDOAAA9AN9‰MHx E1E1E1M$tE1HĈ[]A\A]A^A_E1E11ɺR$uù11뫍DA9AA9|ED}E)A;EWIcDT$4H<HHD$PCHcD$LHT$4HD$@T$LIHcHL$@McDŽ$HLIE$HIEI9$uAHT$@|$`E)|$dLT$PMcAuK[A9L H|$\C BHcHL$PLT$P|$\H@HIHL$hHLT$@zHIHA9}HT$PK@HL$hDDŽ$HD$xH)DDI |$t@19l$tA)A~AMcLL$xLT$(HT$H|$PCDG LK[HCDHׅOLL$ HAA9;+t$\D$HD$xLL$@LITD$EME9ψIcH|$PH@H CD(LD$ HzHI19W H+D$`+T$`AHAIE9|BAAA9|9$+D$`A1I+T$`AHHE9}9l$t}A;$~D|$8l$<$$HD$x9Hl$PK[HTIcH@H|H9wIHIH)ы2;$~!HE\$D$`D+d$dDAA)H$1E11HHT$(AAHl$ LL$HDT/HI4A9uEH A<HcIDt$8\$<$L$DT$dE1Dt$`C4L$1I[uuD$`T$dD)A)A)H|$PH+$H$$H/&D9|$8~OD+|$8D}DT$`Dd$dE)I1I+D$<)EvILT$h|D+|$8D}HVbandalg3.cThe band does not include (0,0) grid pointThe band does not include lower cornerCheck_Score = %ld align_score = %ld zRx 4 BBE B(A0A8IGCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rela.eh_frame.comment.note.GNU-stack @ ( &H ,H 12H @2X }T PO8 ^( .gV V wPh  U   0>Ibandalg3.cgband_linear_qgapNlm_ErrSetContextNlm_ErrPostExNlm_MemGetNlm_MemFree        0  a ~   fpx     X  q  bandalg4.o/ 1276618056 561 502 100644 14224 ` ELF>-@@ AWAVAUATUSH$@L$XHt$`T$\$P$H$X$`D$O$hH|$hDD$TDL$PH$pT$NL$MD$JD$X\$L@t$Kg Dt$\ERD$P+D$T=$DŽ$\$Tt$T)$H$\ $9щ$ G$$+$W"Lux1LQQ QH9u싌$9$|9HH@HHEH@@H9$}Hc$HcH@AD HEHEHE HE( D$KT$JMx]||$MD\$O$$$$$$$$$$|$L2 $ $ DŽ$D$TE1)$ALc$KILHEBHHBtDE|A؋Eh$Lu؃+Et9$CD2|cHcH@HH LuD+IDD+Eh+EtBD+EpADHHH0H9$}LuD$E~L1@H;$uHc$H@HAADADKT+ExBL$\T$X+T$PDŽ$DŽ$HDŽ$$$1$9$)$$~$Lc$H$HT$hD|$TD$DHU`L,KIL$$K4&DD^~~HL$`HE11ALA9~ DA9}A+Uh9+EtAAD+ElFtD+ACD&A9})DкDD)D)DP$J+);$~$$$$$$H$$Lu)ωzA.IV+}lzHD+El D+ElA/IElA)9}C)ƸKrH+EtAЉFD+ElElA)A)7zH)Ǹ-zHDbD;$$&$D$N<t1<Ë|$X|$\Hct$\HNj$D$$$Hc$HHc$H<ȺgfffD$D$I))z*  AD)ApHIcIcIH<Ⱥgfffȉ))փuAgfffAVUUUAAA)AD)IA)At AރOAAADȻ)ApJxdHE1H 8<<AHA9t<<QsHAHHA9DžHuT$\9$r$+T$\HHH$$$$$uxE|$$$$H[]A\A]A^A_ËD$\DŽ$~DEQT$\HډHHDŽ$HUKIH4Hc$H@LI9rpDDLH)IHȋHAD)ʉA);$~"$D$\$)$$HHI9s|$X|$\HcD$HE21uAAĉtj$D$\$D$$$EhEl Eh$ElNjEh$E|El뿅Lu1L@@ @H9u$9$Hc$|6HIHHEH@@H9$}HIADHEHEHE HE(Hc$HvHt$8LKMhDMt߉D)Ȁ|$LBD$E|AD9$|INjIcHR)ÉI։+Ep)ˉD)JB:AHD9$}$~L1@H;$uHc$H@H|$OITI@@ BEpKT؉B|$MuEx+Bt$X+t$PA|$MD$\DŽ$HDŽ$$$$1D9$E)$$~$Hc$HT$8H$H\$hHU`Ht$8D$DHH$HvLD$TLHUDD$t$D$tJ%H\$`H2zH$49~B ΉB9}BB$BDMpE,$+KTK 0BA B +Eh9cEt)AAAD+Ml$9$Ed$C40$9$9AHcNH@I D9[D$AE9T$tHt$`DAyH0H$HEF<HE0A9B ~HEUAHE0DA9}HEE<HE0AD9}HEQ AHE0DA+uh9A9UHEHUAD+MlA9AAHE0HU8AAEHEHU LQAAHE0HU@AA+ElA+utHEHU(qAAHE0HUHAAEDiDmDiHD9Ej T$tHt$`yH0H$qA9A9~\A9 D UlEA)9A A)׉yAEt)AH,Eh|$LExElB9A9AEAAD+MlDIEt)AH9}9A 1AAEl)A9qRAA)AEiA9HEUD+MlAHE8AA9HE Q LQBHE@B D+ElDAEt)AHE(F<HEHB {+Uh9A9AAD+MlEA9+ElAAA+UtQHHEUD+MlA9AHE8AHE Q LQAHE@AD+ElDAHE LQF<HE@B +}ly3HEAD+MlF<HE8AA9EElQAA)9UDIQA9AAEAD+MlDIA9AEAAD+MlDI|$KuPD9$}F$Q+);$~$A\$XD$$$$$H$I$ LuD$A]+ElA) +ulA AqOAAD+Ml*A )։qA)ƋA qAElA)9})NjAyA+EtD)AщAAA$9$K0DmGlDhDhzACȺgfff)ʉƒ)¸A;$~'It$\T$X$$$$|$JHL$8HUHIH Hc$H@HLLL9wxH<DDIH)HHAD)҉A);$~)\$XD$\$)q$$$HHL9v\$\9$D$KD$J1ۋ$+$9$D$xD$\LcJ<LI$IH$Hc$ADHcB!HTHD0$ȃ$A\$B !L$2 $Dt$T)L$PD|$PAA)AD$HcHt$@NHHDžHHcATB $D$LD$MӅtDEHHHHc$HL$`+$Hl$0D$(D$ D$H4HL$h$AH|D$LAE9ELHt$@E1ɉD$D$MD$DEHHHHDžHDEkHHjDEHHHƉ$D$MD$L\$x9$LHH$$$Hc$Hl$0D$(D$ tD$L$$)HcD9D$D$MDN+$Ht$`EH|$hE1D$D$ND$T$\9$}$+T$\HHHLLDEHHHc$HD$`E+$HL$@Hl$0D$(D$ H4D$LD$$D9HtDNH|$hE1D$D$MD$DEiHHHzHHDžHHHHDELHHT$XL$XΉDŽ$|$KHc$HUH@H|$NH HDDp|$NIT$\1D$$L$X$$EL\|$OD$DAD9$;ElIcHR)ÉI։+Ep)ˉD)JB:AHD9$}[HHH$Hc$H\$`Hc$$+$Hl$0D$(D$ H4$AAE9ELHHD$h+$E1+$H|D$LD$D$MD$D$ND$HHHHHV$9$>HH+$ ElKT؉B KT؉B9$D$JD$DD$THl$0AD$(D$KD$ D$LD$D$MD$D$ND$D$O$$$Ht$`H|$hr\$X9$HH+$tLu$1L@@ @H9u1ۋt$X9$KRD$LD$D$$Ht$`H|$hAHl$0D$(D$D$MAD;D$TA D$ DLD$TD$D$D$O$DE;HHHD$MHH9jD$MD$L[HHDMpE9]t$\D$XD$$$$5HHH$H)ʉT$\+T$\HHHHHH$H)ʉT$\+T$\pH\$XHHHH+T$\upA9@ T$\L$XD$$$$&HHHD$L$$DL$P;L$P$D$Ht$`D$D$MH|$hHl$0DNɃAD$(D$ D$D$OD$$DEHHHHD$LHH9 Lu3D$JD$DL$PHl$0AD$(D$KD$ D$LD$D$MD$D$ND$D$O$T$X+$HHH$+$HHH#HHHLuHHHl$Ld$Ll$Lt$AL|$H\$HhAEAAH|$XHt$PL$$AADŽ$DŽ$‰$H$p$H$xH$H$AAD)A9AM9O1ɅOAAA9AN9ADMEDHEx~n1E1E1\$~1H$8H$@L$HL$PL$XL$`HhfCD5A9 BD5A9}AE1E11ɺa$u111oAFHHHD$`HAiHH$ ǒHcEH~#H$ 1HHHBHD9uEEAE),xHcH<HH|$`HD$pH|$`H$H|$`H$H|$`H$H|$`H$H$HD$`HHcHHH$HH$HH$HH$Ht$PH|$XEH$HD$pADDDŽ$DŽ$DŽ$DŽ$DŽ$DŽ$DŽ$DŽ$HD$0D$(D$ D$D$D$$D$lH$p0H$pE1$H$ۋ$D$E1ɋ$L$AЉT$LAE)E9D9EEɐ~!D+$DD$AD);\$lE1E11ɺ$JLcL$lLc111*DHEu/Ll$XAIcALLl$PHcATI,AEDD)D)ÁDL$111H$H\$XLl$PHDŽ$H$DBT.HI D9uVEK$&H$D HH$DD$$$$H$DHD$$$+T$LABEH$ H8H$ H|$pH$H$H$H$H$H$H$H$H$H$H$H+$pL$xHAEDE)A))ӁBDADAD$)Ë$D))UAH$AH1+$ZH$pE111FH$DD8HH$4H$HD E)D bandalg4.cThe band does not include (0,0) grid pointThe band does not include lower cornerCheck_Score = %ld align_score = %ld zRx 4#BBB B(A0A8G$TTTGCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rela.eh_frame.comment.note.GNU-stack @+2h &+,+12+ @2+}Tx,xO`70 ^,.g--w1  2] #  %1#=Obandalg4.cg_band4_alignNlm_MemGetNlm_MemFreegband_l3gapNlm_ErrSetContextNlm_ErrPostExO .    -   $ $  $$ % %  %% 0*%M% r% % % & & /& F& g& |& & & & ;( @(  L(^( Xo(* * %* 2* ?* L* Y* f* s* * * * * X #bandalg5.o/ 1276618066 561 502 100644 5496 ` ELF>@@ AWAVAUATUSHAEqT$H$Ht$ t$D$pL$AA+T$H|$(LD$9ADMA9DO1EDOAA9D$ND$9‰MHx E~1E1E1O$tB1HĈ[]A\A]A^A_E1E11ɺS$uù11뮋L$D 9D$AD 9D$|DD$EL$ D}E)A| AGHcD$0H<HT$HD$`HÃHcT$\HL$0HD$@L$\IHcL\$@McDŽ$IfDLI$$HID$ID$9$uD$LD)l$LLcd$LT$pHL$@DKdT$lHT$`LHLB 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BlastScoreBlkMatFill returned non-zero status BlastStyleMatCreate returned non-zero status zo ?   zRx <4WHTND$lJMQp$HJ^pD4BGB B(D0D8D4 BEE E(A0D8F@4D BBB B(A0A8G$|BCA G`vJLPJQ03DJQ0JQ0<3DTAMF tAMF 4;BEB B(A0A8DpGCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rodata.cst8.rela.rodata.rela.eh_frame.comment.note.GNU-stack @' :&\',\'12\'h@2'OX(ap(p\H n(iI x+.++0 6x `  !&, 2<D@U Nitp Hp   )7D[m  P7`vM anw!3!"`#3 #$@$:$;JZlbandalgn.cHSncbi4na_to_blastna.LC9.LC13.LC14SetGlobaltOptionsGetAlignExtremesPSUGapOptionsCreateNlm_MemGetCC_ExtendSeqAlignNlm_MemFreeNlm_ErrSetContextNlm_ErrPostExExtendSeqAlignPSUGapOptionsDeleteSetLowUpFromBlastBLASTOptionNewBlastTwoSequencesByLocBLASTOptionDeleteSeqLocLenNlm_StringCmpSeqAlignFreeChangeGlobalBandMatrixBLAST_ScoreBlkNewBlastScoreBlkMatFillcallocBLAST_ScoreBlkDestructBAND_LOCAL_ALIGNgband_lineargband_quadraticgband_linear_gapgband_linear_qgapgband_l3gapgband_q3gapLocalBandToEditBlockTracebackToGapXEditBlockGlobalBandToEditBlockLocalBandToSeqAlignSeqLocStrandSeqLocIdGapXEditBlockToSeqAlignGapXEditBlockDeleteLocalBandStructDeleteGlobalBandToSeqAlignGlobalBandByLocAdjustOffSetsInSeqAlignGlobalBandStructDeleteGlobalBandStructCreateLocalBandStructCreateCreatBandStructSeqPortNewByLocSeqPortGetResidueSeqPortFree/Ttt}K P  \i wFOX    u       t }       "#$1 %"#  `# (  4; 0Y ^  js `*   (I N  Z  9'(m)*;+,     / O=y& &.1    0 O''9e.p( )C * + 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RT?eQE_?;f?$p?jdrjgx?V?a+e?r?' ??HP?a)?sM?Zd;?3?HPs?|a2U0*??$E>t VФ> |>5>D\nK>x>Pr>W1_Վ> `>C>{c>x1?a8 ?= t?_76 ?|'?OqB1?8FG9? =ܰB?K?Nz1S? :!t%\?BԳ d?anrl?>t?5\u|?Gveރ?pnꐋ???='o|?7ُ?G|?:̗`?pq?Af?X5;N?X?@߾?ZӼ?ޓZ?St$?:M?A`"?Zd;O? g?Fx $?9#?JY8?a4? cZB>?~k ?58EGr?|?5^?R'?-C6?-C6Yn4???gD4@??@?h㈵>?A@?ffffff333333 @?@??h㈵>??-C6?4@Gz?Yn4?@@??A?A?Ah㈵>?gD?gDSubstitution scores %d and %d are not supportedGap existence and extension values %ld and %ld are not supported for substitution scores %ld and %ld %ld and %ld are supported existence and extension values Any values more stringent than %ld and %ld are supported Gap existence and extension values of %ld and %ld are supportedGap existence, extension and decline-to-align values of %ld, %ld and %ld are supportedGap existence and extension values of %ld and %ld not supported for %s supported values are: Gap existence, extension and decline-to-align values of %ld, %ld and %ld not supported for %s supported values are: %s is not a supported matrix, supported matrices are: Gap existence and extension values of %ld and %ld not supported for %sGap existence, extension and decline-to-align values of %ld, %ld and %ld not supported for %ss_GetNuclValuesArrayBlastKarlinBlkNuclGappedCalcblastn matrix:%ld %ld na%lgraantdatancbi%s%s/%s%s%s%sdata%s%sBLASTMAT%s%s%s%s%s%s%s%sblastkar.cUnable to open %sBLOSUM80BLOSUM62BLOSUM50BLOSUM45PAM250BLOSUM90PAM30PAM70BlastKarlinBlkGappedCalc%ld, %ld %ld, %ld, %ld %s %s is not a supported matrix%s is a supported matrix%6= ףp=?Cl?Gz??Y@@@= ףp=?Cl?Gz??Y@T㥛 ?V-?(\?RQ?Y@?@(\?q= ףp?333333??X@@)\(?Q??ffffff?V@@??Q??333333?X@??Q?ffffff? 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pg7Z g| 0i i pk kblastkar.cBlastScoreFreqCalcRobinson_probfNlmKarlinLambdaNRgtabletabsizes_GetNuclValuesArrayblastn_values_1_5blastn_values_2_5blastn_values_1_4blastn_values_2_7blastn_values_1_2blastn_values_3_2blastn_values_1_3blastn_values_2_3blastn_values_4_5blastn_values_5_4blastn_values_3_4blastn_values_1_1read_matrix_mutex.17970ASCII_TO_BLASTNA_CONVERTnt_probBlastLoadMatrixValuesblosum80_valuesblosum80_prefsblosum62_valuesblosum62_prefsblosum50_valuesblosum50_prefsblosum45_valuesblosum45_prefspam250_valuespam250_prefsblosum90_valuesblosum90_prefspam30_valuespam30_prefspam70_valuespam70_prefstab2tab3tab4.LC1.LC2.LC6.LC7.LC8.LC9.LC10.LC11.LC12.LC14.LC15.LC16.LC19.LC20.LC21.LC23.LC25.LC26.LC24.LC27.LC30.LC31.LC32.LC35.LC33.LC34.LC36.LC37.LC38.LC41.LC42.LC47.LC48.LC49.LC51.LC52.LC39.LC44.LC43.LC46.LC45.LC53.LC56.LC57.LC58.LC59.LC60.LC61.LC62.LC63.LC64.LC75.LC76.LC77.LC78.LC79.LC84.LC85.LC88.LC87.LC107.LC109.LC108.LC105.LC112.LC114.LC113.LC110.LC117.LC119.LC118.LC115.LC121.LC122.LC124.LC125.LC128.LC129.LC132.LC133.LC136.LC139.LC140.LC143.LC144.LC142BlastScoreBlkMaxScoreSetBlastResCompStrBlastResFreqNormalizeBlastResFreqResCompBlastResFreqClrBlastKarlinStoLenConvertEtoPseudoSlogBlastComputeLengthAdjustmentsqrtceilBlastKarlinEtoS_simpleTxMatrixDestructNlm_MemFreeBlastResFreqDestructBlastResFreqFreeBlastScoreFreqDestructBlastResCompDestructBlastKarlinBlkDestructBLAST_MatrixDestructBlastMatrixToTxMatrixSeqCodeTableFindObjSeqMapTableFindmallocSeqMapTableConvertBlastGetStdAlphabetMakeBlastScoreScoreNewObjectIdNewNlm_StringSaveConvertPseudoStoEexpBlastKarlinStoE_simpleimpalaKarlinLambdaNRBlastKarlinPtoENlm_Log1pBlastKarlinEtoPNlm_Expm1Nlm_RombergIntegrateBlastSumPNlm_LnGammaIntBlastGapDecayDivisorNlm_PowiBlastKarlinLambdaNRNlm_GcdBlastKarlinLHtoKNlm_MemGetBlastPSIMaxScoreGetBlastKarlinBlkCreateBLAST_MatrixFillBlastScoreSetAmbigResncbi4na_to_blastnaBlastRepresentativeResiduesNlm_NintsprintfBlastConstructErrorMessageBlastKarlinGetNuclAlphaBetaBlastKarlinBlkNuclGappedCalcBlastScoreBlkMatCreateExblastna_to_ncbi4naConvertPtoPseudoSBlastScoreBlkMatReadNlmMutexInitNlmMutexLockNlm_FileGetsstrchrstrtokstrcpyNlm_StrICmpsscanf__ctype_toupper_locNlmMutexUnlockValNodeCopyStrBlastScoreBlkMatFillmemsetNlm_StrUpperNlm_FileLengthNlm_FileOpenNlm_FileCloseNlm_StringNCpyNlm_FindPathgetenvNlm_ErrSetContextNlm_ErrPostExBlastUnevenGapSumENlm_LnFactorialBlastSmallGapSumEBlastLargeGapSumEBlastKarlinStoEBlastKarlinStoP_simpleBlastResFreqStdCompBlastKarlinStoPBlastResCompNewBlastResFreqStringBlastKarlinBlkCalcBlastScoreFreqNewBLAST_ScoreBlkDestructValNodeFreeDataBLAST_ScoreBlkNewBLAST_MatrixFetchBlastKarlinEtoSBlastCutoffsValNodeAddPointerBlastKarlinReportAllowedValuesNlm_StringICmpValNodeFreePrintAllowedValuesMessageNlm_StringLenPrintMatrixMessageBlastKarlinkGapBlkFillBlastKarlinBlkGappedCalcExBlastKarlinBlkGappedCalcBlastKarlinGetMatrixValuesEx2getAlphaBetaBlastKarlinGetMatrixValuesExBlastKarlinGetMatrixValuesBlastKarlinGetDefaultMatrixValuesBlastResFreqNewBlastKarlinBlkStandardCalcExBlastKarlinBlkStandardCalcBlastScoreBlkFill%789:;Q<u=->j?P@ : K s    P b k      1 C R g    @  @ 1 D S  A   BgCD3E>VF}FGHIJIE_kEI3KxLMNOPPQQRS1  DS  TkUVWXl YZ]wV[T\][%[*6[CTwX^_ #+YT\`nabccdeWfghief;QiVj}e^>jU  !F!a!|!!!! ! 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I1?f?:G?Zg?p?"-_s?~j׫?^Mk?-V?^:B?|?%5:??#S@y0g??(\??. ?&m?).?x!e?zT6[?dz?P E?TI@4:4?iCT?`Y?] BB?5?4b?BI?@"=?}s?bft?_?C ?i??™,? h??(\??\,|e?n?i տ?C ?,[ic?1ݤ??4:4?Y @ xB?f?+}?75G?L ?A~I?vSk%d?T?6?j}?4UH?mj??R?&2??(\??L-mG]?siwp?0{9?{P?,?3 ? I1?iCT? xB?quL@Ư>o?WI?|ۦe?YK.? Ѫa?]7?d_ ?WA?v7D?6@%3^??{?#sUR??(\??d c@[LM1?[mz?hsO?R_uhQ?E?f?`Y?f?Ư>o? ,h@,!? ?K ?yA?d~$?ЩTt@m?0X? ;>?ij??q?+??(\??\@?@Ԯ? 4?u?{?ɾV?:G?] BB?+}?WI?,!?Dp@s^@9>?ξ?oK?j}A?&g|?M_Q?Q&^33?V|J??E&?^t??(\??n/, @5X ɦ?$CQZ?Hހ)?'?q?Zg?5?75G?|ۦe? ?s^@V3@ဴt?ڞDwU?xtv?ݰm?dZ?Q4+?V*?t ??\f*?,??(\??U;X9 @YUij]?L3? ˇ?dэ?TrI?p?4b?L ?YK.?K ?9>?ဴt?*_g?; ؔ?|-%?}9pi?L9?p?ïH>?^:B?_?j}?v7D?0X?M_Q?Q4+?S=?-)XV5?{?.!u%??K;;?-?Vs?$ ??z)X?#}zv??(\??볝?I?Y,h?q?^=?>,T"?|?C ?4UH?6@ ;>?Q&^33?V*?6Пa?á3@C?{?8I?Che??Vs?@y0g? h?&2?#sUR?+?^t?,? @H??ay@,Ғ^?`}p?#}zv?ָ"$?=nԗ??R#,So?w%E@?(\??˒$,^?????????????????????????(\???(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?(\?S?(\?(\?????????????????????????(\???{?S3?k?L=?؊g?. ?\,|e?L-mG]?d c@\@?n/, @U;X9 @ZG?^3{?}?D?ZT?볝?Ǖayf?P@p`??Kj?˒$,^??(\??I) |I@posit.crrbCould not open scoremat file Scoremat is empty posTakeScorematwwbposTakeCheckpoint %c %c %5ld %c -I %2ld %4d %5.2f %.2f 0.00 e_valuesum_eBLOSUM62BLOSUM62_20BLOSUM62_20ABLOSUM62_20BBLOSUM45BLOSUM80BLOSUM50BLOSUM90PAM30PAM70PAM250posReadCheckpointFailed to recover data posReadPosFreqsStandardData recovery failed Data recovered successfully posFindAlignmentDimensionsBposComputationposPreprocessAlignmentposReadAlignmentposProcessAlignment ERROR IN WEIGHTS, column %d, value %lf Could not read scoremat from input file Scoremat doesn't contain intermediate data Scoremat does not contain frequency ratios Wrong alphabet size of %d in input scoremat Missing sequence data in input scoremat Different sequence lengths (%d and %d) in input scoremat Scoremat sequence length (%d) does not match query length (%d) Sequence within checkpoint file has no data or is not protein Failed to convert Bioseq in ASN.1 PSSM to Seq_code_ncbistdaaPremature end of sequence data Query sequence contains '%c' at position %d; if filtering was used, rerun the search with filtering turned off ('-F F') Query sequence contains '%c' at position %d, while sequence withing checkpoint file contains '%c' at this position position frequency (%d,%d) out of bounds Not enough frequency ratios in input scoremat Too many frequency ratios in input scoremat Could not allocate PssmWithParametersCould not allocate PssmParametersCould not allocate PSSM objectCould not allocate PssmIntermediateDataCould not attach bioseq to scorematUnable to open matrix output file %s Could not open checkpoint fileFrequency ratios for %s scoring matrix are not available Cannot print diagnostic information because alphabet size is not %ld Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts Last position-specific scoring matrix computed K Lambda Standard Ungapped %6.4f %6.4f Standard Gapped %6.4f %6.4f PSI Ungapped %6.4f %6.4f PSI Gapped %6.4f %6.4f Attempting to recover data from previous checkpoint Failed to allocate position-specific score matrixCould not open checkpoint file Invalid usage of checkpoint recovery; old query has length %ld, new query has length %ldFailed to reconstruct previous query Stored query has a %c at position %ld, while new query has a %c there. %c appears in query sequence: The query could be filtered. Run with "-F F" option to turn the filter off.Stored query has a %c at position %ld, while new query has a %c thereStored query has a %c at position %ld, while new query has a %c there %c appears in the stored query: The stored query may be filtered. Run blastpgp with "-F F" option to turn the filter offAttempting to recover data from multiple alignment file Could not open alignment checkpoint fileCould not open alignment checkpoint file Inconsistent number of sequences across alignment blocks, first block has %d while block %d has %d sequencesCould not read alignment due to different number of sequences in different blocks Could not recover block structure from checkpointCannot recover alignment checkpoint Could not recover alignment structure from checkpoint Invalid character or wrong number of characters in sequence index %d None of the alignment sequences equals the query sequence None of the alignment sequences equals the query sequence Cannot recover alignment checkpointAlignment recovered successfully Invalid character or wrong number of characters in a sequence Gz?)\(?-C6?-C6?9B.?-C6?i@9B.??Y@?$@?Gz? c?<,Ԛ?-C6?9B.?-C6??9B.????zRx ,4BFE B(A0A8dHAHOBGA A $BED A(D04,BBB E(A0A8Dpd'D,|BBI D(E04qBEB E(D0H8D$ J[`4 BBE E(D0A8Dp4DBBH B(A0I8G4|ABBE B(D0A8D$BED A(G04BBB B(A0A8D4,BBE E(A0A8DpdyAD04BBE B(A0A8G4OBBB E(D0A8G$]BDD D04BBB E(A0D8D4T:BBB B(I0A8GP4'BBE E(D0A8Dp4pBEJ B(A0A8D@4%BBJ B(I0A8G44cBBB E(A0D8D4lBBE B(A0A8GЁ4}BBE E(A0A8D4BBB B(I0A8D,BFB D(A0GCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rela.rodata.rodata.str1.1.rodata.str1.8.rodata.cst8.rela.eh_frame.comment.note.GNU-stack @~>&T~,T~6`~ 1P@>2WM2Y? \ gng@iH x(n.VnVn(sH . p 4]2.FFZ_nw     ( 0 8 @ H P X ` h p  x   ' . 5 < C J  Q[mHzOPp #10'BMR`c qu  1JS[sA$1`?pO_s #&y (&BF`,OV]et6:: A'PDpI%[c%`^5;@FOV u}fxv|posit.cminEvalueForSequenceBLOSUM62_FREQRATIOSBLOSUM45_FREQRATIOSBLOSUM80_FREQRATIOSBLOSUM50_FREQRATIOSBLOSUM90_FREQRATIOSPAM30_FREQRATIOSPAM70_FREQRATIOSPAM250_FREQRATIOS.LC1.LC2.LC6.LC43.LC44.LC45.LC46.LC47.LC49.LC51.LC61.LC64.LC75.LC76.LC79.LC83.LC85.LC106.LC107.LC110.LC111.LC112.LC129.LC132.LC134posCancelposComputeExtentscopyPosFreqsResToIntposPrintInformationPSIMatrixFrequencyRatiosFreeNlm_MemFreecompactSearchDestructposFreeInformationposCheckpointFreeMemoryposCheckWeightsNlm_ErrSetContextNlm_ErrPostExcompactSearchNewNlm_MemGetexitallocatePosFreqsposAllocateMemoryposReadPosFreqsScorematAsnIoOpenPssmWithParametersAsnReadAsnIoClosePssmWithParametersFreeNlm_BSSeekBSConvertSeqNlm_BSGetByteposTakeScorematPssmWithParametersNewPssmParametersNewFormatRpsDbParametersNew__strdupPssmNewPssmIntermediateDataNewValNodeAddFloatValNodeAddPointerPssmWithParametersAsnWriteValNodeFreeBlastConstructErrorMessageposTakeCheckpointNlm_FileOpenNlm_FileWriteNlm_FileClosegetCkptFreqMatrixNlm_FileReadgetCkptNumbercopySearchItemsBlastResFreqNewBlastResFreqStdCompBlastResFreqDestructstrcpyposInitializeInformationexplogBlastResFreqFreeposFreqsToMatrixNlm_NintposScalingBlastMatrixRescaleNewBlastScaleMatrixBlastMatrixRescaleDestructposComputeSequenceWeightspowoutputPosMatrixfwritefprintfNlm_StringICmpSeqIdMatchposDemographicsGetSequenceWithDenseSegposPurgeMatchesposConvergenceTestSeqId2OrdinalIdPSIMatrixFrequencyRatiosNewmallocposReadCheckpointposComputePseudoFreqsBposComputationfgetsfeofstdin_IO_getcungetcCposComputationWposComputationposCleanup #484D4Y4444444  9\j~  9 : :?<S=~<<=4 <y < < < <[ < < < < <n < < <D < < <' <V =  A B C% * 69FD  9  :  A   9 2 @:W \ h9u :  9 0:  9 `!:8 = I9V ,d:{  9 `:  9 :  $91 ?:MEnFEG   9$  2:   9# 1:W \ h9 4 9 E9R h`: h :  9 @:   %98 8F:s x 9 :D6IIJcKtLMNOOPt QyAQCRD 8 ?S  ?S, 1 ?8SP OUAl q ?zS  9 : ` ?S Q UJVx HVVW  TS!YL \_ ]q < ^ ='!<|!\!]"7"aZ"bn""\"]#=###$b$$e%b%%e% % %9% h&gx&h&<&<'<U):*kG+4Q+4+Q,=, , ,9, - X-m- f-m. (#. p/.nV. b. un.n. . {.n. .n / )/mf/k/eu/ /n/ /n/ 00nD0 I0m[0 H`0mm0 p0n0 0n0 0n0 %1 *1mA1 F1m4 4o4 4oH5pi5 r5o5 5o5 5 P6!87p7 7o7 7o7pR8r*94:!:p;<d>"?"A=ApA<1BptBuB4Cr7CpjDwDwDwD4E4$E43E4KE E E E E#E 3F GF$jF F4F F .#G ^G FG G _G *H w[H H H H +I bI I4I I "ISJ<)J<;J<IJvJ<J<J<`K  iKUKYK K K9K LK 4KSKWK dL " LSL H!L "&LS5L 4:L "?LSlL@L%L%LbM&NMdMgMhMiM zM "MSM N:N<VNYwN N N N9N P2P ( BP:QYQ4QWQ 0 R  R "R L'RSFR KR WR9yR  R R:R 4R LRSR4RWR R R9S  >S  _S  vS (S:ZY _Y LdYS!\>\'](Y]']b^)C^v^ ^  ^S^  ^U^{ _|_} _~/_D_{r_|_|_}_~__{_|_}_~_`|`}(`~7`N`{Y`|h`}r`~`` ` `9` `  `S`W a a a98a  =a BaSaWa<a  aUa| b}b~6bLb{c{c P %c:9c  Jc:dcWc c c9c  c:c?c  cUc<=d<d{e  e eSe e e9Yf  mf:f f f9f ( f:f X f fSfWDg psg 0 xg }gSg g g9g p g:g  g gSg g g9g  h:h=h<i Pi j `j*l  m mSm4*ms9m/Km+Pmj_m8smynT'ndngnhnin*4o oHo X o oSo o o9o ( o:p p p95p X :p ?pSTp>np ( |p:upu?uqusu/vjv8)vyvHvdJwgZwhbwiwTw<wp%xux>x<ypEy?Uyq`ysky/sy,~yjy8yyydMzg]zheziz4z4z4z4z4z4z4z4z4z4z4{4#{42{4P{4^{4{4{4{4{4{v|<|<M|<j|<|4|4|4|4|4|4|4|4!}42}4<}4F}4P}4Z}4d}4n}4x}4}4}4}4}4}4b4x44lY _"c&:&ij+4,:1n~4 (08@HPX`hpx!'17AGQWagqw (08@HPX`hpxYeoy (0%8/@9HEPOXi`hpx%/9EOYeoy (08@HPX`hpxyoeYOE9/% | (O10Y18e1@o1Hy1P1X1`1h1p1x1111111222%2/292E2O2Y2.e2o2y22 2(20282@2H2P2X2`2h2p2x333%3/393E3O3Y3e3o3y3Z.33333333 3(40484@%4H/4P94XE4`O4hY4pe4xo4y4444433.3N{N{NO{N{N{N{N{N{N{N {N({N0{N8{N@{NH{NP{NX{N`{Nh{Np{Nx{NNOO&O5O?OIOUO_OiOuOOOOOOOOOO O(O0O8O@ PHPPSXmY`wYhYpYxYYNWXWeWoWyWWWWWWWWWWW W Z Z Z Q( EY0 Z8 Z@ ZH ZP ZX Z` [h [p [x %[ /[ 9[ E[ O[ Y[ e[ o[ y[ [ [ [ [ [ [ [ [ Q [ W X X( X0 Y8 Y@ YH YP YX Y` Yh Yp Zx Z Z %Z /Z 9Z EZ OZ YZ eZ oZ yZ Z Z P Z "S %X /X 9X EX OX YX( eX0 oX8 yX@ XH XP XX X` Xh Xp Xx X X X X X Y Y Y %Y 9Y /Y BS U U U U U V V "V 1V @V( OV0 ^V8 mV@ |VH VP VX V` Vh Vp Vx V V W W !W ?W 0W }R T T T T T T T T T T U U U %U( /U0 9U8 EU@ OUH YUP eUX oU` yUh Up Ux U U U cS S S S S S S S S S S S S STTT%T /T(9T0ET8OT@YTHeTPoTXyT`ThTprxrrrrrrrrrr sssppppp qqq p(p0p8p@hHtPtXn`nhtpnxnnnnnnnnnnnnnnnnnnttt t(t0t8t@tHtP uXu`shspsxsssssUs_sisus?sIs5stnn)qnnnnn n(n0n8n@nHnPnXn`nhnpnxnnn5q?qIqUq_qiquqsssss ttt)t5t?t It(Ut0_t8it@utHrPrX)s`jhjpjxjjjjjjjjjjjjjjjjjjjjj k( k0k8%k@/kH9kPEkXOk`Ykhekpokxykkkkkkkkkkkkklp8o8op8o8o8o 8o(8o08o88o@8oH8oP8oX8o`8oh8op8ox8o8o8o8o8oppqqqqqqqqqqqqq r r(r0)r85r@?rHIrPUrX_r`irhur 8 h     P p 0 h 0 `     H   ` p  0 #h & & `, 4  6X :  A PD I8 [p `^  u x |lookup.o/ 1276618066 561 502 100644 15440 ` ELF>#@@DWDDEBDE~2HfDDADGHAAAÉuABHTHLl$H\$IHl$Ld$Lt$L|$HHHt$T$L$tkHo(GHLLw HH}v|HMHmHAHEHcD$HJ48HHMtBIHHHJT$D$QH\$Hl$ Ld$(Ll$0Lt$8L|$@HHHHBHuI}8IC]8 IHHHID$?I$I\$t@H)I)D$HI$Ht8LeLMe(T$AELMHT$Q=I 4LMe(Me0DGAAҋAE~FHAuAD҉ED8AVxAUIATUSI}pIƾXHIFpIEpHcxPHHC8IEpI^pHcpPHx@HHC@IEpHxHt]HcxPI^pHIUpHCHBP~=E11IFpH\-AHXHHB@Hc|HH<HIUpHD9bP[]A\A]LA^ATIUSHpHHGHt HI|$pHG Ht HI|$pHG(Ht HI|$pHHHtXWP~'11DH@HH<HID$p9hPHxHID$pHx8ID$pHx@I|$pID$p[]LA\fDAUIATUSHHLgMI|$pHHtyHHtSOP~"11H@HH<HID$p9hPHxHID$pHx@ID$pHx8I|$pLHL[]A\A]HL[]A\A]fATHIUSHHtI|$ HtI|$@HtI|$PHtI|$XHtI|$`HtI\$0HuHH{HkHHuLID$0[]A\H[]A\1f.HSHtHHHC[[1fDfDAVAUATUSHHLoPDg LwHHcHHCh.S *KLE1HHC`*Yf.EMME1AI1HHMtDDL?HHI <1HRHuEHA8~IP1HIH9uAIIE9uL[@H[]A\A]A^A8HHNIhA@HIHCh9uGHlA뚍B~׾?HHcIE1E11ɺ$^H1[]A\A]A^1fD1HSHtQH Ht HC { HcHHHCPH{HtHC[fAVAUATUSHHLoPDg LwHHcHHChES *KLE1HHC`*Yf.EMME1AI1HMtDDL?HHI H1H@HuKA8~"IP1fF HvH9uAIIE9uL[@H[]A\A]A^A8FHHVIh A@@B HRHCh9uGHlA뉍B~׾?HHcIE1E11ɺ`$MH1[]A\A]A^1AWAVIAUATUSHHHWH@HD$0HGHHDDxHHCD$X1SH|$0T$_sHL$0Hy HtH|$0HG XHl$0HD$@1HL$@H|$@UUfQfCfA G{ DcDk,HL$@D$Kt$ 32Unable to allocate lookup->position???9B.?zRx M$4}J[P\;t,BGE A(A0BDA $BEA A(D0BGA $$D,<BGB A(A0G@l^F,BGB A(A0G@4BBE B(A0A8G$`LPJZ04BIA GCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rodata.cst8.rela.rodata.rela.eh_frame.comment.note.GNU-stack @- &0,0120A@2x$O a\8@n Pi: x".""' + P}  #(-2 7MHS;^o P$ *8@^Xd ~PPPlookup.cAddPositionToLookupTable.LC3.LC4.LC7.LC8lookup_find_initNlm_MemGetlookup_addlookup_add_indexMegaBlastLookupTableDupNlm_MemDupmallocMegaBlastLookupTableDestructNlm_MemFreeMegaBlastWordFinderDeallocatelookup_destructBLAST_WordFinderDestructmb_make_mod_ltNlm_ErrSetContextNlm_ErrPostExmb_lookup_position_aux_destructmake_mod_ltMegaBlastBuildLookupTablesqrtreaddb_get_totals_exlookup_newlogNlm_NintNlm_PowiBLAST_WordFinderNewlookup_position_aux_destruct?O1B_|!7M"5CQ[c/^      Up|  5 :  F W      # (  4 [ #    7N  \P gf k  w #P$ `&'    H(i( $    !. <%%B%l!u;k6m  (08@HPX`hpxIj  8 P` x      ( P@ p @    P P8 Pncbisort.o/ 1276618050 561 502 100644 24512 ` ELF><@@ 1HtHGHt@~(1Ht@~*1Ht uF11~f.Ht@~)1HHv8HuHx81HG8DATHIUStpH/HtH}H]HHHuIl$Ht+DH}H]8H} HHHuI|$ []LA\[]A\AWAVAUATIUSHHcGHH|$HT$FL<HBL9Hh8fL HH)HImAEAt$A;t$ iLcDIM $)HIAA#DU EfHT$HHLD]B)L9sARt:HI9wE!L9s5H HL9uHыUIIIcAI H\$DEH<C)`H9sE1҅t:HH9wD]EtoH9s3DEt_H HH9uHIII]FI9AD$tHT$D)؉B1H[]A\A]A^A_H9s1Eu 뻃D9ftHH9wL91EDuD9HI9wL9E1E@t HI9wL9aHLNjt_uNHH9uH,H9E1fD4EHH9wHAE9^UMiUu IYHuHHHH9AA9 u#}uI9f[>JHDH9w@HH9tAA9I<$At$ HcHHI$t At$mAUE1ATIUHSHHcuHcWH?H47H)EE]ALu]H} HcHuf;] U HcH}L)HcuLt8AH1HD[]A\A]Lt]tH}HcÀ| t;] tJHcA CEHD[]A\A]Í4H}u HcHHEt];A낍4u HcHHHEtދ]H\$Hl$HHHHt%Ht/H~ Ht @HHC 1H\$Hl$H1HF fAWAAVI0AUAATU1S1HL$DD$IĿI$@HID$HHHt] ډt: t5BЃ w Bw=vH(EAD$AEMAD$@AD$t8LID$ E|$)D$AD$(D$AD$*HL[]A\A]A^A_ÿID$ DUHS1HHtAHHHHHt$HHEH@HBHEHPHH[]HmH]HtfH;H[Hu1HE<-DK-uH<0t0uH<0DtA9u?IcDu,fDHc$HHDD9tڃ.7A.tnHcE1ɋuoIc1ҋt3FDEt 1DD2HDEuD)ED)HcGAx1D:HuIcDJ1ҋtYG-HODIctIc1Ã.A"tFIc?.>.zHt5HHDDAA9&Hc‹u1lBH<0tHc<0LFVuH<0Dt0uIA<0tD9u:HcAu'IcHID A0A9tA..QIc1t-At1D HuzHc1DEt.A@DEt1BDH u)<4D)Ä$FH<0tHc‹D!HcƋ9.A8.@Ƅ@Ht1HID A8A@9Hc‹u1BH<0tHcIcvLcFEt/Hc‹4tQ)@tLBH<0tHc‹A0FH<0tA0uGH<0tLc1B<LcFEtHc‹t=)Hc‹@0LBH<0t A0uHBH<0tLc1B<f.AWAVAUATUSHXHBH|$Ht$HT$Lx8MD$<D$4fIGIW HD$(D$4HT$ EW E) HL$EOiL)HcLJ (HD$D@)EI9sABtE:E6 IL9wE_EI9s7AEL HH9uIHT$EDrL"IcLJ< 5I9sABtfE:$ IL9wEI9s>A$LDD$EE HH9uIEEHcIEOHH\$K)I9s1EtA: IL9wE_E^I9s8AOLDEHH9uIIcƄHH0H9s1Et:MHH9wEH9Րs>EHfD/HH9uHfA_(t`EuEu A<$A$HA$LAED$A9}EA9|IcH$H|$ H4$HHD$ ,T$hHL$`HcH|$ HH HQH1HcHcD$hH|$@LHHD$`@D$(Ht$`H|$@LID$H\$`Hx8-H|$ LHuA|$*bA|$(EA|$*t0]#DKDEDE9ANȅtuLLUAA)HcLLH9E)(҅AD\DKDEH3H}E9DANHcH9(҅'DD)DLH|$@H|$`H|$ D$D$Hx[]A\A]A^A_DL$(DCDE9ANȅtwL\$ LAA)HcLLH9E)(҅ADDL$(DCHt$ H;E9DANHcH9(҅gDD)\AWAVAUATUSHxH|$(t$$HT$HL$y* L$$ HD$PHl$(L$E1Lh IHHT$D|$LDHczA|$ HI$tAEAEHuLau3H}l$$9\$$~H@HHBH9L$$9\$$HL$QyHcAF HHItAFHT$LLBDŽD$LIIIIH9D$$T$$~H$1H;D$$u|$$A9McFIcHHcAEHHDHD$HHIcHcHHHHHT$HBHx8tXHHuHL$y*HL$؀y(EЅHD$ADF>DKDEDE9ANȅt~LL]AA)uHcLLH9E)(҅ADwI}DKDEH3H}E9DANHcH9(҅4DD))AD9l$$D$DHT$z*2D$DiHc$HL$HcHHAHHHHx8?H$PHHSHD$x*nL$PHL$؀y(EЅtAHc$XHL$L$XH9Ht$ L$PHc$HcHHHHD(;D$HHHLHPH0$XHcD$D$LcD$4BLHB;Y1|$$JcL$HIHT$8dHHLBu+HD$x* HL$؀y(EЋD$4D)DЅ&I;l$$YLd$8EwHL$IcHHcLHHLHAHHHx8^EL$DCDE9ANȅM$LAA)OHcLLH9E)(҅AD'd$H;D$HHct$HLHIH$P6EL$DCI4$H;E9DANHcH9(҅DD)?ET$4HD$$HL$y*1Hx[]A\A]A^A_H$HBH9uEL$PJD$XDKDE9ANɅL$PDD)L$PHT$(KDmHlPJ4HE|$$H$~B;$~BH;L$$uዬ$HL$(l$$HcH0B@FPJ`NpRVZ^b 8 P 0h P    P p0 H 0    p ( p` p) . 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H) @< PD @W X_ @r az @ g @ p @ y @   A  B\  g C D    .$%'1*tF'-- /9/P (c3w4S$o x34/**-|$H|$JKT_8(8L:$0;.p  AO8#NOZP&O~QRS<=2R$_$$ (34 :  t!0!1!2"&"8c"" "3"4" #3'#4#:#:$/:%PQ%N%O&O& '$&'$8'$':d( i( u(A( (B(U(:')Vf).)T) *W=*.t*T* *W+$+ , 6, [,:,Y-E--../.Z0/[I/\/ / @0u0z0L0]0^#1_41_O1:1:32 (82`F2a\2 a2 m2Av2 2B2$3  33$3483:3b3b4b74cJ4dV4$b4$n4$z4$4$4:4 4;@5$K6M^6$k6$z6:6$6$%7e7$7 7384@8 @V83m84 9 93'9499 >9 C9fv9g9 93949 : P:3%:4E:$]:$j:$:+ $ 8 P p ` P  `  pX  0      0 8 @p    8 #p ( P+pattern1.o/ 1276618052 561 502 100644 20232 ` ELF>;@@ H+?1IT㥛 ?HH~jt?I+?HHS㥫?Il?HHI +?H9v?LLIv/?H ףp= ?Ƈ-ƇAƇBƇCIjt?ƇDƇEI&1?ƇFƇGƇHƇIƇKƇLƇMƇNƇPƇQƇRƇSƇTƇVƇWƇXƇYƇZƇUƇ*HHL H(IV-?HHH ףp= ?H0L8H@Ih|?5?HPHXHMb?H9v?HMb?L`LhLpLxHHHHHH@AWIAVAUAATIUSH~-ۅjHWE1HHRۅAA9uHĘ[]A\A]A^A_11ADB9 @H9uLDLctE1Ax1E1A9E~@VHcAA9HcI BHA99uD9I9uIcBTDJ4?I  XB9  H % ->H*O X^d jt|@ P"W(/0pattern1.cexpandingget_patLalignALIGN_Binit_pattern_DNAget_patLLfind_hitsS_head.LC19.LC25.LC36initProbsckallocNlm_MemFreeinit_patternstrlenBlastConstructErrorMessage__strtol_internalsscanfNlm_ErrSetContextNlm_ErrPostExexitpat_outputValNodeCopyStrsprintfalign_of_patternmallocfind_hits sf n  X e o k  P X YN S X -[D  Y   t $y / 0 $ / PK $P /\e 7v D! _"!* H> "L !m Rt ! T " !! T/!""#O&w&$&$(C)M)B*. $. /.. 0.. $. / // 0./J/ $O/ /[/m/ 0// $/ /// P/3336 66F6 $K6 /W6i6 0|6 8  p      8 p   P" *P 0impatool.o/ 1276618055 561 502 100644 13760 ` ELF>H@@@?w@$ODú-ABCf޺D׺EfκFǺGf뾺H뷺If뮺K맺Lf랺M뗺Nf뎺P뇺Qf{RqSgTf[VQWGXf;Y1Z'Uf*JLL$1AHHuA~-1HD9t<uAH9u1HHHt$At*A*^HHuAUE1IATIULSH1҅~PE111LE1fDIcA=tA9DO9LAAAuA΃H9uED^V fW~fWLE1AHHE9u*D HE1҅ILHF ^~UL1LcCD9|f(HHHF BYX u˹AHA9uD9f(V|3H~ IcH D*YH9Xf(F~[]A\A]HfDfDAVAUATA)IcăUL4HSB&DN HcLlHcIUHDJ(H@(f.9IP(f.w f.vD9tHcHDHIUH8IUE9J(DR\Z0DZ DIIcLD5zSD;Y @!f.uCzAD9Y ft9D9Q\u@A0f.v5AIIA(f.wf.zufWf.tD;Q\|D9Q\tHcHT5zVD;X |&f.fuHzFD9X t@D9P\fuFf.X0v?HHH@(f.wf.uzfWf.tD;P\fD9P\tA9DAID9H HcIUH|HIEHSH3sD)BA9LcJ|AGf.u4z2fWf.uvztA ;B f@f.udzb;B tZA\;B\AHE9~+HHWI(B(f.vHHOAHE9AD9w[]A\A]A^ËA\;B\}HHOIU"IP(f.f.I0B0f.wf.]WA$;B$HHHOdDLAUIATUS{LcHxHcH1ɅHHIE~HH9H@PuLcJ H1Hd HHD$(HD$0Hu~!HcHuHLHHAHHBPuHEHH@PJIEHx[]A\A]DH\$Ld$Ll$HHAH\$(D$Ll$fWHL$HD$(T$Ll$H1D$A*H1ҾYD$\D$^HD$(H\$0Ld$8Ll$@HHSE1E111H HL$HD$H$f~!H|$HH\$D$H [1fDfDAVAUIATUSHLD4(AA~HcH~E1HH:HH9uE~(HcLHAD$HLfHHH9uIc8H[]A\A]A^DfDAWIAVIAUIATIUSHLD$LL$H|$PLH$HcHx@HD$P</t5E$HcHD$PH HHHv.pniv. a list of master sequence file names, one per line, in the same order as a list of profile names, named .snThe following files will be created:i. a collection of ASCII files, corresponding to each of the original profiles, named .mtxii. a list of ASCII matrix files, named .mniii. an ASCII file with auxiliary information, named .auxFor the list of arguments to makemat enter makemat -copymat is the second profile preprocessor in the IMPALA software package.copymat converts ASCII matrices, produced by the primary preprocessor, makemat into a database that can be read into memory quicklyi. a collection of ASCII files, correspondingto each of the original profiles, named .mtx (created by makemat)ii. a collection of profile master sequences, associated with the profiles, each in a separate file with arbitrary name and a 3-charecter suffix starting with ciii. a list of ASCII_matrix files, named .mn (created by makemat)iv. a list of master sequence file names, one per line, in the same order as a list of matrix names, named .sn;v. ASCII file with auxiliary information, named .aux (created by makemat)The files input to copymatices are in ASCII format and thus portable between machines with different encodings for machine-readable filesThe following file will be created:i. a huge binary file, containing all profile matrices, named .matimpala is the main program in the IMPALA software package.impala searches for matches between a query sequence and a library of score matrices, prepared by makemat and copymat.impala produces BLAST-formatted outputBefore you start searching, check that in the directory with the library you have the following files.If the library has K matrices, you should have:K files with names ending in .mtxK files with names ending in a 3-letter extension starting with c1 file with name ending in .sn1 file with name ending in .aux1 file with name ending in .mn1 file with name ending in .matReference: Alejandro A. Schaffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul (1999), "IMPALA: Matching a Protein Sequence Against a Collection of "PSI-BLAST-Constructed Position-Specific Score Matrices",zRx 4$LdBHD F(,tBBB L(H0,BJA A(LUPTAN0,BBE A(A04DBEE E(D0A8DP$|VQPEX@GCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rela.rodata.rodata.cst8.rodata.str1.1.rodata.str1.8.rela.eh_frame.comment.note.GNU-stack @T' &,612>xK2Z2 ni4 x.# &X      $+ HdV itT @ ,CPimpatool.cpro_quicksort.LC2.LC8getResIMPALAfillResidueProbabilityIMPALAfillSfppro_quicksort_hitsNlm_MemGetNlm_MemFreeaddScoresToSeqAlignMakeBlastScoreIMPALAfindUngappedLambdaBlastKarlinGetMatrixValuesaddSuffixToNamestrlenimpalaMakeFileNamesstrcpyIMPALAPrintHelpPrintTildeSepLinesadd_string_to_bufferExIMPALAPrintReference X B :O Tc w |1< L \ q  {  > c  ` Hk {    (     0  P  # p ( 8 = V a q Pv     0          8 . x3 C H a l | P  F    X    X    8$ )9 >  8  x  j@ K#*29 B(I0R8Y@bHiPrXy`hpx 8  P x       H  @  Pposit2.o/ 1276618046 561 502 100644 9424 ` ELF>@@ AUALATIUSHhED$D$D$D$D$ D$$D$(D$, D$0 D$4 D$8 D$< D$@D$DD$HD$LD$PD$TD$XD$\{LT$H11E1L E1KcA=t9O9LIIuAHE9uʉ^n )='1HHH='uA*ʼn HEHHF ^~OLT$E1L1McC9|f(HHHF CYXHHuAHE9ufW9N|2HN HcH*YH9Xf(F~HhH[]A\A]E1E11ɾw$1uAA1ҿ$'111A@A@ AWAVAUATUSHxH|$8D$(HD$`HL$ HD$XHT$HD$^L$AHDyHRD!^D$H@ HT$@HD$8L$PD$0lD$pE1ED$lE11E~EHT$8J(=t%*HL$@HJYD$p^AHE9uD$lID9|$luH|$D$Lt$8D$$^D$H11E~6IM.AE=t*YD$pYD$HAEHD9uʃD$$ID9|$$uHD$~9H\$8IcHT$@HH H\$H41BH9H|$`H|$XHx[]A\A]A^A_H?AHl$Hl$(L$E1E1E~TE~BHD$811J= allowed score range %dAttempting to recover data from previous checkpointCould not open checkpoint fileInvalid usage of checkpoint recovery; old query has length %ld, new query has length %ldFailed to reconstruct previous queryStored query has a %c at position %ld, while new query has a %c thereFailed to allocate position-specific score matrix?i@???zRx ,PBHD A(D4LBBB B(A0A8K$BAC DP42BRB B(I0A8LGCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rodata.cst8.rela.eh_frame.comment.note.GNU-stack @ h &4,4124X@2O8(a`\p$` k@.tnn` P PP $).38  =O]hq 2&8Iposit2.cfillSfpimpalaScaleMatrix.LC4.LC5.LC6.LC7.LC9Nlm_ErrSetContextNlm_ErrPostExNlm_MemGetNlm_NintupdateLambdaKNlm_MemFreeimpalaKarlinLambdaNRimpalaScalingBlastMatrixRescaleNewBlastMatrixRescaleDestructimpalaReadCheckpointNlm_FileOpengetCkptNumberNlm_FileCloseResToIntgetCkptFreqMatrixposFreqsToMatrixgetRes9     /v A Ft 2<2       6S X  d    H   W h y     ! "  ! &  2 D N ]  k }             # 5 ? X ]  i         $  p  p' .  < O #Y #l (|       <  P P   mbalign.o/ 1276618057 561 502 100644 16856 ` ELF>0@@ G ADHAt)LE1DDAIAAE9ڋ0A4uH@ GHHufDfDUHSHHt#fH}H]HHEHHuH[]SHHHtCC @BHCH[H1fH\$Hl$HLd$Ll$H(AG9OW )ЃvKS H Bk C 1҃C H\$Hl$Ld$Ll$ H(9wH?D,DH1HtHDkfO HHЃD 1҉E1E11ɺ$]1EE17D@@@Hl$Ld$HH\$HF It#HHt3LVHUH9vLH$Hl$Ld$HE HH9sHufHSHt,H?HtHHCHHC[1S1Ht:1H@ @@0HHt HC H[f.ATIUSHHtRH8I<$I|$I\$ HuHH;HkHHHu[]LA\HGHtH8I|$I|$AWAVIAUATUSHHHDaDDA)ЃHDy@Dh|AߋT$D$D GIHHY1HHtH9}HHHu@KL@KLNſ(CD$HIIH|Dt$C<'D|$HEF ADF$.DA9DLEA9E|DAAtDDAщAuD9ω|DADDtfAɉDDu\$El$CH4D))9u"AAH$D9L$$~D9T$4C4APf;t$|IGE ~ t$|D$D;L$$DD;T$4$DAE9D$|AD$H$Ht$p+$9KTHc$IG$$H$L$d$$+D$`H$E9r$A$AH$(VUUUD)B 0AA)H$H$BA;S H[CA;S |H{uHHHE#HEEE @BHkAtoD$$D$4tHt$(HT$811:[9l$$9l$4Ht$(H\$8HHD2:DtfDD$$D$41E1AH\$8HL$(DBA<IH4ƒ))9$I9l$$9l$4 뗋T$$D$$Ht$(1DD$4HAL 0A@EHT$8A9AIH4DA))9IA9l$$|9l$4r1hE9tOIGAfAPƄ$AAxAƄ$AƄ$AED9L$$~qD9T$4~jHL$(IcHL$8: uTHAAHL$(AxHH4ABHH AAD9L$$D9T$4HH8tC4 APHL$(Ic||$D`D9L$$~D9T$4~ʋt$@HH$A,2EH$HT$8I>H4D))9hAAH$D9L$$ID9T$4>fDHSHt$hH@H H H$HHLIcHH)HAHDH$D$xI$$$9D$\H$(Bt$dH$:HcD$dHL$hDl$dLd$Pi9tw9)څ~H$(~H$(gIAtXI$HcHtT9M99Ӊ i9u)څ~H$(I AuH\$hHt$HH$(H|$#u>H$(B AD@At'H:E1DDAHAE9ы04uߋD$dH[]A\A]A^A_APD$Ƅ$AHHHL$pDD9L$$)D9T$4D$HL$(T$ D)HD)HL$8Hc: D$$HHL$(AxD)AHH4D$4D)AD9L$$HH ~,D9T$4~%HH8AAD9L$$C4 H$HD$hH\pHHCE1E11ɺ$u111IH$(D$dT$4H$( D$db)؃~H$(PH$([HDŽ$lHHHt'CC @BHCI] H$&H1AWEAVAUATUSHHH$HT$PH$L$$H|$`HD$@H$HT$8$t$\L$LHD$0ID$ $$T$/ڋ$H$DD$KMl$)Ѓw  $D$($tJ9Ήȉ|ωt׉u$9$ $ 9$$|$$$$$u$$~I$$$$$$$$|$KHT$8HL$@S D$/ l$LD\$\ED$LT$\H|$PHL$`HHc8: XD$L1HH48D$\H|$`HH 89l$L~ 9l$\;l$\HD$@HT$8(*;l$LH|$0IL$H$4H$Ho@H@HuT$(D$‰D$$Hc…IDH$~D$$1HADHH9uD$\$$$$It$D$\AD$ AA9MHcÉ$H<Hc‰$HDH~"11 H;$uAPHHH$H$EpHcH$T$xH@H$@ADD$tHHD$Hh@D-D$(t$/+$+$+$$H$@t$ht$lH$HcD)H H$ H$@HHH$H$H$ HHHH$H$H$(H$0H$8D$L$\$\D$pD$|DŽ$$$9T$p$DŽ$?Ƅ$Ƅ$DŽ$HDŽ$L$ \$ D$$H$$ HH$|$(*,DŽ$H$D;t$t$ H$H$EH$t$tDŽ$HIHD$+D$ LlF$0IcH@L+$HI@H$(EJD; H$0D;|H$8HBTH$D; "H$D; |H$ HBD9LЍJAL9$AQNCD+H$(9H$09H$8HBLH$9|#H$9H$ HBD9LfAL9$KlNH$@9UC+ADMEF9|+H$F9H$JADA9DLfC B 9$ D;$A|$KD$LHT$PD)H< t$lh D;D$L9\$\D$ L$D))H$HH$H$$8$I$HT$`H4$$Ѓ))9u)AH$$D9D$L~ 9\$\vA ;$DE~$D$D;D$L;\$\DAI D9L$tEV$HL$D$(H$H+$D 9 H|$H$Hc$HH|$8H@\$pDHT$@\$|+D$x$$A9$FH$H$@$D4 4HH$@AD+$HH$;)$H$Hˉ+$D$pHH4+$+$HH +$HH9NDpA9DO$t$A9DLH$@9MD$t9D$tMD$t$D$tt$9D$tND$tD$tt$p9$xH|$09Dd$tE)EH$AHA;Q H[CA;S  H{uHHHE0HEEE @BHk륋$$$u2D$/DD$LE; |$\/ HT$PHt$`11: 9l$L9l$\Ht$PH|$`HHD2:D:tD$/HL$0EHt$8L$$$H$DD$K$HD$@H$L$LHT$Pt$\H$H|$`HH[]A\A]A^A_EyDT$LEFDL$\1E1E3T$/HD$PHL$`A<DBIH4йƒ))9I9l$L9l$\떋D$LDt$\ED$LHt$P1DD$\HAL 0A@EHT$`A9AIH4DA))9)IA9l$L9l$\ WfDE9t@E@ED$AA$ED$E+$H$HcH$H$HDHD$H$$$$ H|$H$H$ H$(H$H$0H$89T$pH|$0HL$8$E1Dd$|D1EED+$H$HcH;,H$IcH4HcH@H HHA@9AD)څ~H|$0AIEuH$H|$HTH|$0|$Ku;HT$0B AD@At'H:E1DDAHAE9ы04uHcD$|H$D$|D$|HH[]A\A]A^A_HT$PIc|t$lD;D$L9\$\L$hHH$ى$H$$HT$`8$I$H4$$Ѓ))9AH$$D9D$L9\$\iA9 H$H$@H  HED$D$HSH@H H IcH$H$H@HH)HHLuD;D$LQ9\$\GD$ T$Ht$PH|$`D))HHc0::D$LD)HH40D$\)HH 8AD9D$L9\$\HH8tD;D$L9\$\Ht$PH|$`Hc::A@HH40CHH 8AD9D$Lt9\$\jHH8tSHHCE1E11ɺ$1H$t$t1HHH|$JH|$0tH|$0l$|AD+$H$HcH9,H$@9,H$HcH@H֋4D+$H$+$HcH9,+H$@9,|H$HcH@H;t}E1H|$0A H|$0D+$H$HcH9,H$@9,H$HcH@H׋|D+$H$+$HcH9,gH$@9,|ZH$HcH@H;|}AE1AAGH$@;,~JH$IcH4HcH@H mA뼿^@{1HcH$H@HHHHʋ\IcH4H9BMB9 AHDŽ$HH8We@1111HHHt(CC @BHCI\$ H$ZH1mbalign.cedit_script_more: bad opcode %d:%dFailed to allocate %ld bytes for abmpCannot get new space for greedy extensionzRx <4L8ADD lGA;JQ0   wJL  9D$VA<BDA 4\KBBE B(A0A8DP$BDA G04A BBB B(A0A8G4oBEB B(A0A8GGCC: (GNU) 4.1.2 20070626 (Red Hat 4.1.2-14).symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.rodata.str1.8.rela.eh_frame.comment.note.GNU-stack @-8h &P-,P-12P- @2`-zT-(OX@ ^0.g6060w040  `7 ; 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Y E) CI F}   + Y E  K!!(!H!D!I X p   @  @( H 0    ( P  x `!mblast.o/ 1276618056 561 502 100644 62968 ` ELF>@@HHHHHPIBf.wf.v DËB9A|DfDHH+B+Q)fDHH61HH t Hu Huf9|֋JtFt++)DfDEuDHcH 0E1E~1HcEH8t61H:HAD9uDAHHL1E1:HAD9tHfE1AA9}BHc9<~эAA9|DADfDf uOft*fttu fÅttt1f uft%f@u_tt  uøÅҐtt uøffutt  uøDfqtt Vø@AVAUATUSH@LMWHHWHHDL0HLhIB(IH>1H@HuFtHL$(LL$ LD$0L׉D$<Ir(D$8HD$8HD$HD$;|0G\;A\|(HD $D $IED$2DAVG|LDtG|;A|E9;W\;Q\A$I$HHL$4HPAI$1-Ld$H\$ЉHl$Ll$ILt$L|$HXWfff9})E1LH\$(Hl$0Ld$8Ll$@Lt$HL|$PHXHHHHt9p~HHcHHHHHT$iHHT$ 1ɋpHD$HT$LpHHT$IDBEHD$XHt$HH}HIILHIGAG<tm<HD$D$HhT$9PE$|$fI$fHHtHt$HH}HIGI{IGHtHLHHCH[ HurIGHeHLHHCH[HuEH|$ OHt$ Ht$ fpHB(HH8HHD$ Hl$H\$HLd$Ll$Lt$L|$H8Hu)E1LH\$Hl$Ld$Ll$ Lt$(L|$0H8DO EtE1E1IAID;m IsHHEASAЃ<t EtI^H ؐATISHHtStHf@f@PSxP@P HL`(H[A\AWAAVIAUEATUSHHH|$L$tFE1|$uuLLD)D)9~jLLHIuMvMuH[]A\A]A^A_fDA_HL))D)D)9~LLHIuHT$HHcʼnH HH98AWAVIAUAATI UDS1H(HD$ H?H$HH|$ H¾H|$ HIA~HcHD$LH|$ AvH|$A1LH|$ I~tLHHc1I>HD$?t.HH|$HL$HcЃHc LAH|$HHHT$H<$1AVx;H\$ME1H<$Hى1ALAVD9}LH|$H|$H([]A\A]A^A_H|$ AvH|$AE1LNAWAAVAAUEATUSHHD$PH|$HL$DD$D$1fDH|$HHHt~|$Gd/H1A9x HD)H1D9x HD)AO)р|$9HcHD$@H9}mHD$H@HHD$NH[]A\A]A^A_H1D9x HD)HAOD)9pHD)|$cD9Ht$HcH0D2H9}H\$Hl$HLd$Ll$H(HI҉EE͸tHt+H7HSkDc1H\$Hl$Ld$Ll$ H(fHtH?tG~HcH{ULHcH{ULHcHCDkHH@AWAVAUATUSHhGH|$Ht$ff҉ӉT$ HcHH|$HD$(y8HT$H\$1E1D$\HD$`HL(HH[Ht_HCLHp<uHHCHEHT$`HL$(HCH< I_AHIH]HufAIH,HHHD$0HHT$`HL$(HD$PHD$8H HT$0HHHT$HHH@HCHfD9uEE6fD$BD$D@HcD$DHL$0Dd$DHAE9DHD$ HH@H@LhIcH4@HA9~HLH@H@Hp<tA9OT$DDED9}0H\$0H1H ÍBxHHQHHP7D9|HT$HHcHL$ H\$PfD$Bl$DHH@HHHA9H\$PHt$BH|$8L$BA~E\$HX[]A\A]A^A_IHLHHD$8I}IMuB|AF$AF(IUAF0IH@IF8IEHHTHIHD$8IFBAFI@AF4IHAHL$THAIHIEIEIUHHDxHcH<HHAWAVAUATUHSHHhMH|$(DD$$LL$Ƅ$_DŽ$XHH J HT$(BDjff҃HcHHHT$0HL$(HH0 Hy0HE1) DHH[EdDHuHT$(Al$E1E1HBHR}HcHH\HHC' H\$HD$(SdHHH{XHD$(H@xǀf@(aH@HH\$(NHHL$HAfB@AhBD9HHHD$(HHL$HAQBaB|BBf fBB AdJf fB9 f ]BHD$ HL$B BHH\$(H|$0HH9NʼnBHHHD$HpXH HfH\$HL$(MHBxHByCaHBsHD$(HT$(HjtLH\$(IHHD$(HHǀHHT$PxL HDŽ$HDŽ$HDŽ$HL$DHD$HHD$XHD$`HD$hHD$pHHHDŽ$H$H\$(sA9AH|$P5H\$(f{HT$(BfЃf)f#MLDIDHL$(DH|$PHcHHHHHH\$ACdA9H$HHǺHE1E11ɺ)$jH$t+HH$HHH< HD$(H\$PApH[H\$PD9HT$(HHx H\$(SDA9 Hf$fDŽ$IL,H,I5HT$(fDŽ$rAIf$I HD9HD$(HBD*B+*D$@~f$$H\$($EHCHf$T$@JD8H0AHHHfEHHD$(HHH (HFpH(HHHBHAHBHAHBHAHB HA HH^pH;HL$(Hqf$HL$(HHHGhHGpHG`A9HL$XIHL$IrHII 9HG`HHtHL$(|$@@^PfWۋ0HLHHD$(HBD"B+"HT$(D$@HBT$@+$XJL(HD$(HHG`H^@,9MHT$(AB9,r$X4H\$(4H0HcH)H HD$DH0EHHH@ BSHB8HA0BQBH\$DC4EHD$(HHC(BTHL$(HB@C4HB BRHL$H\$(HBwHHHAPfBpHHBhABXHAHB`A`BrAbHBtHHA@HBHA8BuA9HBvHH\$A|$HT$($9~H\$9APMHD$(HCBCBVB\HT$(Ƃhu t1HL$(ƁhH\$lDD$$pHD$(HL$HALBUH\$(؉BHHH1(Hh[]A\A]A^A_HE1E1HT$(HjH\$(f{5,HHH@ BSHB8HA0BQBhH|$PH|$PIH|$PLǺIHT$EIع1Bd1҉$1jE1E11ɺ$mHD$HHD$PHD$XHD$`HD$hHD$pHDŽ$HDŽ$HDŽ$HDŽ$HDŽ$H|$HMt LIMt LIfKHL$PHIHL$PE1E11ɺ$f$$HUnable tIo calculIate KarlIin-AltscIhul paraHmeters, Icheck quIery sequH$L$L$L$L$H$L$L$DŽ$enceƄ$HL$(H$HPHT$(HHHPhHPpHP`DeH} A\$H1H} ICl$H1H\$(IƁHL1E1E1$q11^Bf?fTfD6- DHL$ fyd fNAdfBAdfByH$THHHH$H$PHHHH$H$LHHHH$LH$H$H$HL$(qH@HHT$(HH\$(HCHSH* HHD*@Yf. S2H$1H߃2E1E11ɺ$HT$(HqHH\$(HA(HHB@BTHA4BRB %s %.*s blastnMB_TWO_HIT_MIN_STEPBLAST_OptionsBlkPtr is NULL Query is NULL BLOSUM62Homo_sapiens.n.gilMus_musculus.n.gilRattus_norvegicus.n.gil;R%s%s;R -d rodents.libBLASTSetUpSearchMegaBlastSetUpSearch failed.Mega BLASTCannot reallocate hsp_array for a result hitlist, size %dMemory allocation for query sequence failedBlastScoreBlkMatFill returned non-zero statusQuery sequence %s removed: length %ld is less than wordsize %dLimiting the number of HSPs per database sequence to %dFailed to construct a lookup tableIntersection of gilist and database IDs is emptyMemory allocation for greedy algorithm failed.Database %s was not found or does not existLocation outside of the query sequence range Empty query location provided UNABLE to reallocate in MegaBlastSaveExactMatch for ordinal id %ld, continuing with fixed array of %ld HSP'sUnable to allocate %ld extra spaces for stack %d9B.?}B?Y@X@?@xDzRx E4LUd~|5,BBB A(A0Dp4wBBB E(A0A8DBGA 44BEE B(A0A8G4lBGB 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HE1HB@Ht*IHHzD;O uA;G~MQIB@LHF@Hr@BD$E\Hc$HD$H$E-Ht-1H$A;$HH[@HHuՋ$L$L$E1I$Hx(Hf <r I$HB(HtHH@Ht 9 JH$HT$H$$DL$xD$HT$T$lH3H8HHtOI$HB(H@HAHB(Hx@HHI$Hx(HG@I$1ɺHx($H$H$H$]$t$tT$xD$pH$1AtAFD1҃|$xET$x9)Ѓ H$t$xA~H HL$H$Iŋqdy`H Hf@dHHT$HCxHBHC HBHHHz,t$ǃdǃǃfCfHٺHLHIHHL$H$qdy`H If@dHHT$HCxHBHC HBHHHz,t$ǃdǃǃfCfHٺLLHHHLLMKLHHBHuHjL}qHLe@H$H$ID$0H8$E\$(EE1DŽ$HDŽ$H\$`H$E1HDŽ$HKL,AFHH,IcHHH$A9ExA;ErE;t$(}kH$tEID$0H<IGIAE;t$(}ID$0H$H$H<(ID$0H<IH$H$t}H$H$1ɺI}(H$Ht$1H$AIU(1H$Hy<z$$9$tH$E9t$(H\$`11HKH Hx($H;$|Hc$HIH$HD$`1DŽ$1HHH1Hz(tHc$$IH;$|ы$H$H$H$D$pD$x=HT$DD$xE$HT$HaH|$`BHD$(H|$`H00HL$0HT$H|$`H1H\$(HT$H|$`H3R"HT$0HHD$(HL$Ht$H|$ LLH/ IU(Ƅ$HBHHHH{@HkHCHHC@HHHkuƄ$rDQzA9$H)HE1HB@H.IHHzD;W| uA;G}MUIA@LH(HHl$PHBD$|HH$L$HD$||$|t=H[HHHLH$;D$|}D$|HED$pT$xHL$L$HøD$pD$x(|$xtR$9D$pMD$pH[HۉD$pHLLH$;D$x}D$xA9y;z$HH1HP@H HHHPD;Ju;z~HɐHA@HF@Hq@A9y;z$HH1HP@HHHHPD;R|u;z}H$H{pD$|D$pL$x^H+H{@HtHC@HH[H_LCfA8uI@fAxHPHBH@IP~E1E1IHJADH4>I@ |JBD I@ BLA@ID9UHaHD$EHc$HDŽ$H$I$HB(HHHtKHHH{@HkHCHHC@HHHkuI$HB(HtHH@Ht 9HL$H$H$$DL$xDD$lHL$L$tH3H8KHHtOI$HB(H@HAHB(Hx@HHI$Hx(HG@I$1ɺHx(I$H@(H@H.HHH{@HkHCHHC@HHHkuǐHH@ADH!AHD tS$H[A9DLHHjH$H$H$9}HT$HE$H$DL$xHT$H$H3H8چHHHHHEHuI$HT$EDD$xHHT$$H$H0H$H8耆HEH{@HHC@I$1ɺHHX(AID9${I$HT$EH$DD$xHHT$$H$H3H8HHgH^@HI$DŽ$DŽ$HB(HfHH@HY9PH@D$lL$tH2HøD$lD$t(|$ttX$9D$lMD$lH[HۉD$lH~0H$H$H$;D$t}D$tI$D$l\$tH@ADHRAHD!tJ$H[A9DLHH~'H$LH$9}I$DŽ$DŽ$HB(HHH@H9H@D$lL$tHHøD$lD$t$|$ttT$9D$lMD$lH[HۉD$ltoH~0H$H$H$;D$t}D$tI$D$l\$tI$$D$I$I$$D$I$$@$@$@$@ư>:0yU>h㈵>|=?Y@X@?Y@?Y@?Y@ư>h㈵>H׊>Y?Y@$@score --SPIDEY version 1.35-- Genomic: %s %s, %d bp mRNA: %s No alignment found. Number of exons: %d Number of pieces: %d Strand: plus Strand: minus May fall off left side May fall off right side May fall off both sides mRNA coverage: %.1f%% bothneitherleftrighterrorMissing mRNA ends: %s Poly(A)+ tail length: %d Genomic: %s %s mRNA: %s %s %s wstdout

Multiple Alignments

#FFFFFF#FFFFCCBlock %d #336699#800080minus strand%s: %d to %d %s %s<-flank %dflank->%s Top --SPIDEY version 1.40-- CDSCDS: %s %d - %d, %d bp mRNAStrand: minusStrand: plus Reverse complement (-) uncertain Number of splice sites: %d %s coverage: %d%% Missing %s ends: %s -- may fall off end5' UTR id %.1f%% 3' UTR id %.1f%% 5' partial 3' partial %s: %s %s %s %s.%d%s%dSequence %s mrnacdsSubsequence Sp_%s.%s %d %d Sequence Sp_%s.%s Method Spidey CDS Source_Exons %d %d DNA_Homol %s Start_not_found Stop_not_found blastnm Lspidey.cError in SPI_DoAln Alignment indexing error rNyes@Fragment %d Exon %d: %d-%d (gen) %d-%d (mRNA) id %.1f%% gaps %d splice site (d a): %d %d overall percent identity: %.1f%% Fragment %d Exon %d: %d-%d (gen) %d-%d (mRNA) None of the alignments in the set appears to be a multiple alignment.

Block %d 

minus strand%s: %d to %d %s
Exon %d: %d-%d (gen)  %d-%d (%s)  id %.1f%%   mismatches %d  gaps %d  splice site (d  a): %d  %dExon %d%s: %d-%d (gen)  %d-%d (%s)  id %.1f%% mismatches %d gaps %d  splice site (d  a): %d  %dNon-aligning poly(A)+ tail length: %d
Aligning poly(A)+ tail length: %d
Exon %d: %d-%d (gen)  %d-%d (%s)
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